Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25g11
(673 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 31 0.11
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 0.46
SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|ch... 28 1.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.1
SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1 |Schizosa... 27 1.9
SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr 1|... 27 3.3
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 26 5.7
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.5
SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide 1,2-al... 25 9.9
SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 25 9.9
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 25 9.9
SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.9
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 31.5 bits (68), Expect = 0.11
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 389 DENRRDLIYGSAGDATLNYHRNSLDKQTY-MPWNSKGRKHKKKGMSPETYNSKYPYDYMN 565
DEN + + SA TLN L++QT + S R ++ + + Y YDYM
Sbjct: 29 DENATERVLVSA--ETLNKTARRLNRQTLDEEYGSTIRPNEGEAANYGIYFDDTEYDYMQ 86
Query: 566 NIRDVANEN 592
++R++ NE+
Sbjct: 87 HLRNIGNED 95
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 29.5 bits (63), Expect = 0.46
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 1/89 (1%)
Frame = +2
Query: 401 RDLIYGSAGDATLNYHRNSLDKQTYMPWNSKGRKHKKKGMSPETYNSKYPYDYMNNIR-D 577
RD + +G L H+N+ + P S K E NS +++ D
Sbjct: 67 RDSLKSDSGSPRL--HQNATAPTSSTPLQSPDESVNKLNSEDEEGNSSVAPFFLDTTNFD 124
Query: 578 VANENISSCAENSSVCSTDQEGFQKAEAF 664
N+NI++ E S T +GFQ E +
Sbjct: 125 RLNDNITTDDEQLSPVLTANQGFQSQEQY 153
>SPAC4F8.08 |mug114||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 151
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 142 AEKLEFGKGKWYRSGYIKCKETK 210
A+KL G W R+GY KCK K
Sbjct: 12 AKKLRNGTKVWARAGYFKCKLLK 34
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 527 ETYNSKYPYDYMNNIRDVANE 589
ETY S YP++ NIR++ NE
Sbjct: 38 ETYKSLYPFESNINIRNIKNE 58
>SPCC297.03 |ssp1||serine/threonine protein kinase Ssp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +2
Query: 443 YHRNSLDKQTYMPWNSKGRKHKKKGMSPETYNSKYPYD 556
Y R S+D + S KH++ GM T+ + YD
Sbjct: 575 YSRTSMDTDDVASFESPNAKHEESGMPVVTFRNYENYD 612
>SPAC13G7.12c |||choline kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 353 TTNYLLNRKINPDENRRDLIY 415
T NYL++R PD N R L+Y
Sbjct: 301 THNYLMDRSRYPDFNARKLVY 321
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 53 ILELFIHQIKILLSKIWHGFLYYSFNDFEMQKSLSLEK 166
IL +FI + +L K HG YY D + +K+ S K
Sbjct: 571 ILGIFIRTLIVLFRKSGHG-TYYRILDDQSEKATSYNK 607
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 413 YGSAGDATLNYHRNSLDKQTYMPW 484
+ S G TL R ++DKQ Y+ W
Sbjct: 816 FSSEGFRTLCIARRTIDKQDYLEW 839
>SPAC2E1P5.01c |mns1|SPAPB1E7.13c|mannosyl-oligosaccharide
1,2-alpha-mannosidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 377 KINPDENRRDLIYGSAGDATLNYHRNSLDKQTYMPWNSKGRKHKKKGM 520
K+ R+ LI + ++ +Y K Y P +GR + +KGM
Sbjct: 39 KLKGSTRRKALIKKTFIESWTDYETYGWGKDEYYPIIKRGRNYLRKGM 86
>SPAC7D4.02c |||src |Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 9.9
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = +2
Query: 452 NSLDKQTYMPWNSKGRKHKKKGMSPETYNSKYPYDYMNNIRDVANENISSCAENSSVCST 631
N L KQ + +KH + +T+ ++ +Y++ +NE IS +++ T
Sbjct: 56 NDLTKQVCVELMQCNKKHLEASRYFQTHVKEFMKEYVDRENKFSNETISK--SSAAALMT 113
Query: 632 DQEGF 646
E F
Sbjct: 114 SMENF 118
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 473 YMPWNSKGRKHKKKGMSPETYNSKYPYDYMNNIRDVA 583
Y W++ R +SP Y++ DY+NN D +
Sbjct: 156 YPAWSAFTRGTMHNPLSPAIYDATLRPDYLNNPSDAS 192
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 512 KGMSPETYNSKYPYDYMNNIRDVANEN 592
+G SP T + Y Y+NN++D N +
Sbjct: 58 RGDSP-TNQDRMAYGYLNNLKDTTNRD 83
>SPAC630.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 495 EENIRRKECLRKRIIQNILMIT*TIYGTLPTKTFPPAPKI 614
E ++R+ +CL + + I + TLPT + PP P I
Sbjct: 94 EHHVRQTDCLP--LYEPITALNQQYLKTLPTTSTPPPPAI 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,005
Number of Sequences: 5004
Number of extensions: 51647
Number of successful extensions: 164
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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