Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g11
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053...    29   3.4  
04_02_0004 - 8430902-8431210,8431295-8431445,8431542-8431830,843...    29   3.4  
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641...    29   4.5  
03_02_0741 - 10857656-10857844,10858315-10858848,10859516-108598...    28   5.9  

>06_03_0507 +
           21603472-21603750,21604371-21604463,21605046-21605372,
           21605588-21605863,21606095-21607114
          Length = 664

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 584 NENISSCAENSSVCSTDQEGFQKAEAFPF 670
           NEN+ +C ++  +CS  ++  +++E  P+
Sbjct: 259 NENVETCVDDQKMCSDQEKCLRRSECGPY 287


>04_02_0004 -
           8430902-8431210,8431295-8431445,8431542-8431830,
           8431873-8432083,8432184-8432380,8432454-8432555,
           8432666-8433998
          Length = 863

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 491 KGRKHKKKGMSP-ETYNSKYPYDYMNNIRDVANENI 595
           K R+    G  P +   SKYP+ +MN+  +V +EN+
Sbjct: 476 KSREAFLSGNQPSKKVQSKYPFQHMNDSNEVGSENV 511


>06_03_0499 +
           21461608-21463427,21463517-21463627,21463867-21464143,
           21464265-21464353,21464508-21464595,21464698-21464907,
           21464985-21465110,21465429-21465620,21466532-21467188
          Length = 1189

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 374 RKINPDENRRDLIYGSAGDATLNYHRNSLDKQTYMPWNSKGRKHK 508
           R I  D ++    YG AG  TL      LD+  Y  WN++  K K
Sbjct: 655 RMIEADTSKHLNDYGEAGLRTLALSYRVLDESEYSSWNAEFLKAK 699


>03_02_0741 -
           10857656-10857844,10858315-10858848,10859516-10859824,
           10860521-10860622,10861446-10861613,10862734-10862847,
           10863003-10863107,10863206-10863336,10863680-10863804,
           10863890-10864061,10864411-10864505,10864771-10864841,
           10864923-10865009,10865119-10865184,10865401-10865499,
           10866631-10866672,10866757-10866822,10866910-10867101,
           10867224-10867289,10868473-10868811
          Length = 1023

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 462 TNKLTCLGILKEENIRRKECLRKRIIQNILMIT 560
           TNKL C G+L+E ++ ++  L   +++  L IT
Sbjct: 255 TNKLLCQGVLEELDVSKRLMLTLELVKRELEIT 287


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,813,977
Number of Sequences: 37544
Number of extensions: 267592
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)