Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g09
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    29   0.58 
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c...    29   0.58 
SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyce...    26   4.1  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 124 RALLALKMWNASRFCVSSLRRGHAN 50
           R+++A  + +ASRFCV SL+R  AN
Sbjct: 570 RSIVAKYLPSASRFCVESLKRQKAN 594


>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 373 WLWLKIWTQEIGVAMLFSLGPNAVPY--QTDINDDRIFDPEI 492
           +LWL  +   IG  + + L  NA+PY  QT+  +D+++   +
Sbjct: 249 FLWLLPFPNSIGEGVEYPLNANALPYLPQTEEKNDKLYKSSV 290


>SPCC4B3.06c |||NADPH-dependent FMN reductase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 106 LAPTVLYLKGGVEMSTRLCHRYATWASSRFVRE 204
           + P +L + G V  S RLC   ATW      RE
Sbjct: 10  ITPKILVIMGSVR-SKRLCPTIATWVGEMGKRE 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,269
Number of Sequences: 5004
Number of extensions: 51496
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)