Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g07
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    27   0.33 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    24   2.3  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    24   2.3  
SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    23   4.1  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    23   5.4  
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    23   5.4  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    23   7.1  
SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyce...    23   7.1  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    22   9.4  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    22   9.4  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 164 MPAPPGAHGARSTTGXPGG---SRSCNVHNAPTGDS 66
           +PA PG  GA +  G PG    S S N+ NAP G S
Sbjct: 545 VPAMPGIPGATAPPGAPGSYNTSESSNL-NAPPGVS 579


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -2

Query: 170 KRMPAPPGAHGARSTTGXPGGSRSCNVHNAPTG 72
           +++ A   + GAR+  G P    +C++ N   G
Sbjct: 203 EKLSATVASEGARTIPGRPENGGNCDIKNLSRG 235


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 16/64 (25%), Positives = 23/64 (35%)
 Frame = -2

Query: 203 KATASXRSAPSKRMPAPPGAHGARSTTGXPGGSRSCNVHNAPTGDSFATLFARPVAATAL 24
           K+ +  ++  S+    P G     S        R     N P    FA+L   P + TA 
Sbjct: 215 KSPSDGQNVRSRAKKIPSGMSAEESDELLSSSGRKTRSFNTPFSSFFASLEETPGSYTAH 274

Query: 23  AAGV 12
             GV
Sbjct: 275 LGGV 278


>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 80  PTGDSFATLFARPVAATAL 24
           P GD++   +ARPV A ++
Sbjct: 80  PDGDAYVNRYARPVTAGSI 98


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 64  SRHFSLVPWRRPLS 23
           ++ F L+PWR+P++
Sbjct: 278 NKTFGLMPWRKPIN 291


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +1

Query: 157 AGMRFEGAERXDAVAFHPLLAPRP 228
           A +RFEG+   D   F   L P P
Sbjct: 240 ASLRFEGSLNVDLAEFQTNLVPYP 263


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 79  GALWTLHEREPPGXPVVERAPWAPGGAGMRFEGAERXDA 195
           G  + L ++   G PVV    +APG    R E  ++ DA
Sbjct: 844 GESFDLSQKRRRGEPVVHHFGFAPGSTPRR-EWLQKLDA 881


>SPCC1223.14 ||SPCC297.01|chorismate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 395

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 137 ARSTTGXPGGSRSCNVHNAPTG 72
           AR      GG+ +C + N PTG
Sbjct: 224 ARDNHDSIGGTVTCVIRNVPTG 245


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 106 EPPGXPVVERAPWAPGGAGMRFEGAERXDAVAFHPLLAPRP 228
           E  G PV+ +A    GG G+R   +    A AF  +L   P
Sbjct: 253 EKIGYPVMIKASEGGGGKGIRQVTSTEKFAQAFQQVLDELP 293


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 115 GXPVVERAPWAPGGAGMR 168
           G PV+ +A    GG GMR
Sbjct: 186 GLPVIIKAAMGGGGRGMR 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.133    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,287
Number of Sequences: 5004
Number of extensions: 9278
Number of successful extensions: 22
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)