Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g02
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   1.5  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    24   6.1  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    23   8.1  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 94  AEVAETSHARMAPPVKTTAT-AMPTAPIVHQRQETAAN 204
           A      H    PPV+++ + +MP AP+ H    T  N
Sbjct: 735 APTPAVKHHPPPPPVRSSISPSMPPAPLTHANSSTPMN 772


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +1

Query: 88  CRAEVAETSHARMAPPVKTTATAMP-TAPIVHQRQETAANGHLKETFENDPFCF 246
           CR E   ++H R  PP   T    P T P  H       + H        P+CF
Sbjct: 147 CRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHH-----PPHPHFHNNNYPPPYCF 195


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 181 QRQETAANGHLKETFENDP 237
           +++E A    +KETF++DP
Sbjct: 177 RKEEEAREKRMKETFKDDP 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,148,053
Number of Sequences: 5004
Number of extensions: 17208
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)