Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g02
         (311 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   1.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   4.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   6.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.0  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 281 IHNHKVYIQSP*KQNGSFSNVSF 213
           I N KV+I  P  +NG  SN++F
Sbjct: 58  IWNDKVFITIPRWKNGVPSNLNF 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 115 HARMAPPVKTTATAMPTA 168
           HA+M  P  TTAT   T+
Sbjct: 217 HAQMGRPSYTTATMATTS 234


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 307 FFIDHNCLLSIIIKYTSRVLKNKTGRFQMFP 215
           F  D +   + +I+Y +R   ++TG  +M P
Sbjct: 523 FVEDSDDYWNCVIQYNTRAENHQTGTAKMGP 553


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -3

Query: 141 LYRWRHPCMTRLRNLRTALL 82
           ++ W HP +  LRN    L+
Sbjct: 539 IHTWIHPWLPLLRNRLDTLI 558


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 88  CRAEVAETSHARMAPPVK 141
           C   +   SHA +  PVK
Sbjct: 168 CSTPIGNLSHALLKDPVK 185


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +1

Query: 88  CRAEVAETSHARMAPPVK 141
           C   +   SHA +  PVK
Sbjct: 221 CSTPIGNLSHALLKDPVK 238


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,848
Number of Sequences: 438
Number of extensions: 1196
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6595479
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)