Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25g01
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    30   0.36 
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    28   1.4  
SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|c...    25   7.7  

>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 199 NIYKLCINYLSLNHWNVVYGLLENNIFTGRRPSSIACMFKK 77
           N Y   ++Y ++++W  +Y LL  N+F G+  SS   +F K
Sbjct: 549 NDYSPMLSYEAIDYWKSLYILLNENLFVGQ--SSFKSVFLK 587


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -3

Query: 265 VSSKTFKSSSIVPSNQKTE*NCNIYKLCINYLSLNHWNVVYGLLENNIFTG 113
           VS+  + S +I+        N + Y   +N + L+ WN   G+  NNI+ G
Sbjct: 226 VSNGYYTSRNIMSFLLSNNTNTSSYPFSVNGVELDVWNENAGVFINNIYFG 276


>SPCC757.08 |||exosome subunit Rrp45 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 291

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -2

Query: 179 KLFVFKSLECGLRLTGKQ 126
           K FV  SLE GLRL G+Q
Sbjct: 12  KEFVLNSLEKGLRLDGRQ 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,870
Number of Sequences: 5004
Number of extensions: 55905
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)