Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25f19
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces... 29 0.86
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 2.0
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 2.0
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 27 2.0
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 27 2.6
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 26 4.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 26 6.0
SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr 3|||M... 25 8.0
>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 0.86
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +3
Query: 432 LRRGCTEFVKNQRSNASMSGALGDPKSTTSY 524
L+R EFVK+ RS+ + G++G+P + S+
Sbjct: 373 LQRAGNEFVKHDRSSLRVLGSVGEPIAPESF 403
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 522 YEERPQPVTPASLPRSLP 575
Y +P+P TP++ PRSLP
Sbjct: 629 YSFQPRPATPSNPPRSLP 646
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 381 NYVSSVSRSEKLLVDVDLRRGCTEFVKNQRSNA 479
N + + + LL D D +R CT +V SNA
Sbjct: 263 NIYAMTTNAPNLLQDPDFQRECTAYVSTNSSNA 295
>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 2.0
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = -3
Query: 479 CV*PLILHKFGTSSSQVHVYEQLFRSAYRRHIVHVEHSRRAKPVRQLKYPYFVT-LR*PV 303
C+ + H F + VH Q F + RRH++ R + Y Y T L P
Sbjct: 195 CLNKQLDHFFSYKVTTVHKSYQRFATLLRRHLLDKTAKRYHDLCEKRPYKYITTDLLSPS 254
Query: 302 L*FYANNIFKACP 264
L +A++I + P
Sbjct: 255 LTCFASDILQTVP 267
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 63 LLKVVCAA-GVCKSTEKPVARNSIRLGREHNGRPVKVTVRVVNIPKSAVEYEIKSTSTGP 239
++KV+C +CK E P+++N I + + + T+ E E S P
Sbjct: 782 VVKVICKMLKICKKLECPISQNVIDIIHRASITSDEQTILTFT------EREDLFISLTP 835
Query: 240 YYRRTILNWTCFEDVVSVELKDRS 311
Y +LN + F D ++E K +S
Sbjct: 836 YLSEDVLNHSPFNDTNTLETKLQS 859
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 438 RGCTEFVKNQRSNASMSGALGDPKSTTSYEERPQPVTPAS 557
+G VK++ SN G+ +PKS + P P+S
Sbjct: 376 KGAETDVKSEGSNNHEQGSFNEPKSNVDSNDSASPKRPSS 415
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 26.2 bits (55), Expect = 4.6
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +3
Query: 543 VTPASLPRSLPDCLSYQDQVCLYFSTAAIYIVALILCLLI 662
VTP+S+ + L D L Y D FS A Y + L++ L+
Sbjct: 841 VTPSSVKKLLLDLLCYNDNANNEFSDA--YFICLLIDSLV 878
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 441 GCTEFVKNQRSNASMSGALGDPKSTTSYEERPQPVTPASLPRSLP 575
G T+ + SN + L P + P+P P S+P LP
Sbjct: 930 GLTQEITQLGSNMRLPTKLTRPSNDGRKASGPRPAAPPSIPPPLP 974
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 105 EKPVARNSIRLGREHNGRPVKVTVRVVNIPKSAVEYEI-KSTSTGPYYRRTILN 263
E P+ + S+ + E+N ++ ++NIP S + +E K++S P R +++
Sbjct: 85 EDPILKPSLSVW-ENNRLLIEKLTSILNIPSSQINHEFYKNSSAWPITIRNLIH 137
>SPCC613.08 |||CDK regulator |Schizosaccharomyces pombe|chr
3|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 590 SGSSVPLFLDCRYLHSGLNIMPPNYNRTVD 679
SGS V L ++ R ++ + ++PP YN ++
Sbjct: 177 SGSQVGLIVNERLINMPVQVIPPMYNMLLE 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,076
Number of Sequences: 5004
Number of extensions: 54637
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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