Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25f19
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797 33 0.29
06_03_1446 - 30220158-30220278,30220866-30222229 30 2.1
06_03_1434 - 30139990-30140110,30140698-30142061 30 2.1
06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624 30 2.1
02_03_0026 - 14045653-14045874,14047023-14047215,14047518-140476... 30 2.1
02_04_0312 - 21942310-21943356 29 2.7
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 29 3.6
07_03_1754 - 29226516-29226974,29227012-29228430 29 4.8
05_01_0550 + 4820086-4821255,4822112-4822321,4822429-4822524,482... 29 4.8
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 28 6.3
01_06_1559 + 38247463-38247499,38247711-38247747,38248181-382482... 28 6.3
05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290... 28 8.3
03_05_0531 - 25317446-25317762,25318000-25318160,25318239-253183... 28 8.3
02_02_0620 + 12210812-12210997,12212397-12212474,12212744-122128... 28 8.3
>02_02_0202 - 7742137-7744636,7744760-7744973,7745755-7745797
Length = 918
Score = 32.7 bits (71), Expect = 0.29
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +3
Query: 324 EIRIFQLSNRFCTARMF-NVNYVSSVSRSEKLLVDVDLRRGCTEFVKNQRSNASMSGALG 500
++ I L++RF + F NV S++ K L D DL + CT FV+ N S L
Sbjct: 747 DVAIASLTSRFEQLKAFENVFGFLFTSKNLKSLDDTDLWQCCTNFVETFSHNNSSDVELN 806
Query: 501 DPKSTTSYEERPQPVTPASLPRSLPDCLSYQDQVCLYFSTAAIYIVALILCLLIITV 671
D S L +LPD L ++ + + A Y L+ +++TV
Sbjct: 807 DFFSELKV-----------LQATLPDALKSAPEILEFITAADCYPNVLVAYRILLTV 852
>06_03_1446 - 30220158-30220278,30220866-30222229
Length = 494
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 162 VKVTVRVVNIPKSAVEYEIKSTSTGPYYRRTILNWTCFEDVVSVELKDR 308
V + ++N+P + KS+S G NWTC E V ++DR
Sbjct: 148 VVAALEMINLPSQFALHRYKSSSGGGDGDEIAGNWTCEEVFVEEAVRDR 196
>06_03_1434 - 30139990-30140110,30140698-30142061
Length = 494
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 162 VKVTVRVVNIPKSAVEYEIKSTSTGPYYRRTILNWTCFEDVVSVELKDR 308
V + ++N+P + KS+S G NWTC E V ++DR
Sbjct: 148 VVAALEMINLPSQFALHRYKSSSGGGDGDEIAGNWTCEEVFVEEAVRDR 196
>06_03_1415 + 30013398-30014548,30021401-30021552,30022596-30022624
Length = 443
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 162 VKVTVRVVNIPKSAVEYEIKSTSTGPYYRRTILNWTCFEDVVSVELKDR 308
V + ++N+P + KS+S G NWTC E V ++DR
Sbjct: 148 VVAALEMINLPSQFALHRYKSSSGGGDGDEIAGNWTCEEVFVEEAVRDR 196
>02_03_0026 - 14045653-14045874,14047023-14047215,14047518-14047618,
14050145-14050272,14050409-14050502,14050749-14051237,
14052622-14052915,14053602-14053732,14053829-14055440,
14055539-14055651,14055902-14056933,14057023-14057145,
14057250-14057688
Length = 1656
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 285 VSVELKDRSSKSYEIRIFQLSNRFCTARMFNVNYVSSVSRSEKLLVDV 428
++ E++D +SKS + I Q + M ++ +SRSEKLL D+
Sbjct: 1373 IAEEMRDTASKSL-VTIHQQGQQITRTHMMTLDIDQDLSRSEKLLGDL 1419
>02_04_0312 - 21942310-21943356
Length = 348
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 534 PQPVTPASLPRSLPDCLSYQDQVCLYFSTAAIYIVALIL 650
P P+S PRS D LS+ D + + F A + V ++L
Sbjct: 18 PVAAAPSSPPRSGGDSLSFSDVISISFFMAVFFPVFIVL 56
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 144 EHNGRPVKVTVRVVNIPKSAVEYEIKSTSTGPYYRRTIL 260
+ NG PV+V +V NIP++ +E +++ + P + +L
Sbjct: 642 KENGAPVEVESKVENIPETNIESKVEPPAAHPASQADLL 680
>07_03_1754 - 29226516-29226974,29227012-29228430
Length = 625
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 495 LGDPKSTTSYEERPQPVTPASLPRSLPD 578
L DP Y QP P S+P SLPD
Sbjct: 426 LFDPIVEQEYNHEEQPCRPGSVPGSLPD 453
>05_01_0550 +
4820086-4821255,4822112-4822321,4822429-4822524,
4822610-4822828,4823201-4823395,4823466-4823612,
4823712-4823861,4825015-4825145,4825234-4825477
Length = 853
Score = 28.7 bits (61), Expect = 4.8
Identities = 30/109 (27%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = +3
Query: 216 IKSTSTGPYYRRTILNWTCFEDVVSVELKD----RSSKSYEIRIFQLSN----RFCTARM 371
+ S T +YR T DVVSV+ D + SY I FQ S +
Sbjct: 424 VPSAKTVTFYRSN----TFAVDVVSVDADDLQMAKKISSYTIGPFQSSKPEKAKVNVKAC 479
Query: 372 FNVNYVSSVSRSEKLLVDVDLRRGCTEFVKNQRSNASMSGALGDPKSTT 518
N++ + S+ + L +VD+ T + ALGDP S T
Sbjct: 480 LNIHGIVSIESAMMLEEEVDVPVATTNETLKDDTKMDTDDALGDPASGT 528
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 357 CTARMFNVNYVSSVSRSEKLLVDVDLRRGCTEFVKNQRSNASMSGALGDPKSTTSYEERP 536
C+ R+ V SS + K + R C + ++Q+ N S G P+ +
Sbjct: 395 CSPRLAGVE-PSSTKEARKKRMARQRRLSCLQQQRSQQLNLSQIHISGHPQEPSPRAAHS 453
Query: 537 QPVTPAS 557
PVTP+S
Sbjct: 454 APVTPSS 460
>01_06_1559 +
38247463-38247499,38247711-38247747,38248181-38248276,
38248671-38248788,38248844-38248878,38249173-38249452,
38249701-38249820,38250369-38250620
Length = 324
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +2
Query: 53 LFYFIKSSLCRWCLQIYRKASCQEF-----NTIRTRTQRTTCKGYSACCKHPEIG 202
LF F+ + W +I +K S ++F N + C YS CC+H + G
Sbjct: 18 LFLFLSPVVTFW--RIIKKRSTEDFSGVPYNMTLLNCLLSACSSYSPCCRHGQDG 70
>05_06_0136 +
25928152-25928659,25928767-25928899,25928987-25929058,
25929150-25929221,25929507-25929670,25929760-25930025,
25930115-25930241,25930599-25930667,25930765-25930957,
25931053-25931299,25931342-25931470,25932367-25932654
Length = 755
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +3
Query: 597 QVCLYFSTAAIYIVALILCLLIITVLSIRIYC 692
Q + S AIYIVA ++ +L+I ++I ++C
Sbjct: 277 QAAKHKSKLAIYIVAPVVLVLVIVSVTILLFC 308
>03_05_0531 -
25317446-25317762,25318000-25318160,25318239-25318336,
25318462-25318623,25319707-25319799,25319909-25319971,
25320549-25320694,25320804-25320961,25321033-25321225,
25321865-25322093
Length = 539
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 104 RKASCQEFNTIRTRTQRTTCKGYSACCKHPEIGRRIRD*KHKHRTLLQTNHSQLDML 274
RK S +E++ TQ++T K C PE R + D H+ R Q + S+ +++
Sbjct: 464 RKYSKEEWDDF---TQKSTRKALMECTATPEFARWVADNAHRLRVEQQDDASEDELI 517
>02_02_0620 +
12210812-12210997,12212397-12212474,12212744-12212848,
12212998-12213022,12213214-12213266,12213523-12213635,
12213777-12213801,12214560-12214601,12214666-12214726,
12216027-12216043,12217143-12217257,12217431-12218659
Length = 682
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 66 LKVVCAAGVCKSTEKPVARNSIRLGREHNGRPVK 167
LK++C +C+S + + S+ L +HN +K
Sbjct: 592 LKLICEEKLCESIDSSMVATSLALAEQHNCNGLK 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,410,582
Number of Sequences: 37544
Number of extensions: 353500
Number of successful extensions: 984
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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