Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f19
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81146-1|CAB03521.2|  341|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF024501-1|AAZ91348.1|  590|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z66496-5|CAA91280.2|  507|Caenorhabditis elegans Hypothetical
           protein E04D5.3 protein.
          Length = 507

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = +3

Query: 564 RSLPDCLSYQDQVCLYFSTAAIYIVALILCLLIITVLSIRI 686
           R+L +  + Q++ C  FST+ +Y   ++LCLL  T + + I
Sbjct: 451 RALREARNSQEKTC--FSTSRMYFTLILLCLLFATTVVVFI 489


>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = +3

Query: 531 RPQPVTPASLPRSL---PDCLSYQDQV 602
           RP+PVT AS PR++   P C++  DQ+
Sbjct: 71  RPEPVTQASKPRNVCETPGCVTLADQL 97


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 42/162 (25%), Positives = 61/162 (37%), Gaps = 17/162 (10%)
 Frame = +3

Query: 162  VKVTVRVVNIPKS--AVEYEIKSTSTGP----YYRRTILNWTCFEDVVSVELKDRSSKSY 323
            V V V  +NI K   AVE   + T+ GP    ++   +L    FE+      KD +   Y
Sbjct: 2002 VSVLVSTLNIAKKSDAVELINQCTAMGPIGGIFHLAMVLRDCLFENQNVQNFKDAAEAKY 2061

Query: 324  --EIRIFQLSNRFCTARMFNVNYV-SSVS--RSEKLLVDVDLRRGCTEFVKNQRSN---- 476
               I +   S   C   +     V SS++  R      +      C E + +QR      
Sbjct: 2062 YGTINLDYASREHCDKNILKWFVVFSSITSGRGNAGQTNYGWSNSCMERMIDQRRADGFP 2121

Query: 477  --ASMSGALGDPKSTTSYEERPQPVTPASLPRSLPDCLSYQD 596
              A   GA+GD             V   +LP+ +P CLS  D
Sbjct: 2122 GIAIQWGAIGDVGVILENMGDNNTVVGGTLPQRMPSCLSSLD 2163


>Z81146-1|CAB03521.2|  341|Caenorhabditis elegans Hypothetical
           protein K10D11.1 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 19/79 (24%), Positives = 33/79 (41%)
 Frame = +3

Query: 87  GVCKSTEKPVARNSIRLGREHNGRPVKVTVRVVNIPKSAVEYEIKSTSTGPYYRRTILNW 266
           G+ +  E     NSI  G  H G  +   V V NI    ++ ++ + S    YR +   +
Sbjct: 243 GIDEMVELRPQLNSIYNGTVHGGTQMSSLVSVANINMQMIDAQMINESNLTVYRGSPAAY 302

Query: 267 TCFEDVVSVELKDRSSKSY 323
           T  ++    +LK     S+
Sbjct: 303 TFKQNYTGAQLKSALPLSF 321


>AF024501-1|AAZ91348.1|  590|Caenorhabditis elegans Hypothetical
           protein F39E9.4 protein.
          Length = 590

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
 Frame = +3

Query: 321 YEIRIFQLSNRFCTARMFNVNYVS---SVSRSEKLLVDVDLR--RGCTEFVKNQRSNASM 485
           +E R+ +L     TA+   +       S+ + E +    DL    G T  +K  + + + 
Sbjct: 85  FETRVIELYPMNTTAKQLVIRPTKLKFSIPQEELVRAIRDLLSVNGITSIMKKVKEDVAE 144

Query: 486 SGALGDPKSTTSYEERPQPVTPASLPRSLPD 578
           S AL         + +P+P T + L +++PD
Sbjct: 145 SFALDKEIGNIHIDPQPKPATLSELQKAVPD 175


>Z79756-4|CAB02116.2|  478|Caenorhabditis elegans Hypothetical
           protein F53C11.7 protein.
          Length = 478

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 381 NYVSSVSRSEKLLVDVDLRRGCTEFVKNQRSNASMSGALGDPKS 512
           NY+++  +  K ++ +DLR  CT   + +   A+++G    P S
Sbjct: 371 NYIATFGQDSKEVLILDLRLPCTPVARLRNHEATINGLSWAPHS 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,260,796
Number of Sequences: 27780
Number of extensions: 319861
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)