Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f17
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc...   160   1e-40
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   3.3  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   4.3  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   7.5  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.5  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   9.9  

>SPBP8B7.24c |atg8||autophagy associated protein Atg8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score =  160 bits (389), Expect = 1e-40
 Identities = 69/119 (57%), Positives = 92/119 (77%)
 Frame = +3

Query: 63  MKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQF 242
           M+ Q+K++ SFEKRK E ++IR KYPDR+PVI EK  K+ +  +DKKKYLVPSDLTVGQF
Sbjct: 1   MRSQFKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQF 60

Query: 243 YFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFSDENVYGN*F 419
            ++IRKRI L PE A+F F++ ++PPT+A M ++Y+EH  ED FLYI +S EN +G  F
Sbjct: 61  VYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +3

Query: 54  NINMKFQYKEEHSFEKRKAEGEKIRRKYPDRVPVIVEK 167
           NIN+   YK E    +R  E    ++KYP  +   + K
Sbjct: 154 NININESYKNETKSNQRLGEDVPSKKKYPHSMDAEISK 191


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 628 TLNQNKDVKTKQSFTCLKSFILFI 557
           TL    + KT +SFT LK FIL I
Sbjct: 546 TLTAKSEAKTIRSFTKLKLFILLI 569


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 18/86 (20%), Positives = 40/86 (46%)
 Frame = +2

Query: 365 RFLSIHSIFRRKCLWKLIPNYSLSNSFTLSDHMVKFNLSLRLKLCIILWYFFIINWHIIL 544
           RF SI S+      + +  NY L N F+ +    + ++ +   +  I W   +IN+ +I+
Sbjct: 58  RFFSILSLVSCLAYFTMACNYGLKNVFSSASFFREVSVRMVYYVRYIQW---LINFPLII 114

Query: 545 YLSSYE*YKTFQASKGLLCFHIFVLV 622
            +  +    +      ++C+ +F +V
Sbjct: 115 VMLHWTVGVSILEIAYVVCYVLFAIV 140


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 646 FITAVMTLNQNKDVKTKQSFTCLKSFI 566
           ++ A+   + N     KQSFT LKSF+
Sbjct: 238 YMNAINNFSSNVQEGAKQSFTQLKSFL 264


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/21 (52%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 443 NYLKVNNLELISIDIF-VGKC 384
           N  KVN ++LISI++F +G C
Sbjct: 71  NKSKVNEIQLISIEVFIIGIC 91


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,373
Number of Sequences: 5004
Number of extensions: 56444
Number of successful extensions: 145
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)