Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f11
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    30   0.37 
SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    28   1.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   1.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    27   2.0  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    27   2.6  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    27   3.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.4  
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   3.4  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    26   6.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   7.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   7.9  

>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 22/94 (23%), Positives = 40/94 (42%)
 Frame = +3

Query: 12  HSRYEAQATSETCYGNNTVIRVGFVINNFFYPLYWSCFDQNRLEVLYAWYEQNPPNAVHQ 191
           HS+  + A   T + +   + VG   ++F YP   S  D    +  +     +P   V++
Sbjct: 312 HSKLPSSANPNTPFNSTATVDVGAAGSHFPYP-QPSNLDAINAKTYFQSSSNSPAPYVYR 370

Query: 192 TGVTRPSCWRFFPWGLRQYNVHASSTKNYTSVPR 293
             +  PS   F P   R  +V  ++ K+   +PR
Sbjct: 371 NNLP-PSATSFQPSSSRSPSVDPNTVKSAQHIPR 403


>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 192 TGVTRPSCWRFFPWGLRQYNVHAS 263
           TG   P CW  +PW  +    H S
Sbjct: 173 TGCNTPDCWIMYPWEAQDIEEHDS 196


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 454  NSLEQKLRARIGE-AGYNTTVYTGTFGVTQLRDQN 555
            N L Q     +G+  G N  +Y GTFG   L+D+N
Sbjct: 898  NQLHQSAVRILGKMGGRNRQIYLGTFGFDFLQDEN 932


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 138 LEVLYAWYEQNPPNAVHQTGVTRPSCWRF-FPWGLRQYNVHASSTKNYTS 284
           LEVLY       PN      ++R     F +P  L+ Y+ HA+S  +YTS
Sbjct: 236 LEVLYQATNGQLPNLDLFNTISRIFMQHFNYPLRLQGYDFHANSGSSYTS 285


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 642 IHNFVKVQRNRYLRVIVSVPVKVNINKLAILVP*LGYAEGSRVNS 508
           + N+V+  RN +L V+ +  V V      +++  LGY  G  V S
Sbjct: 128 LQNYVQFPRNMHLSVLAASHVLVEFLLAGVILIQLGYVFGYHVQS 172


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
 Frame = +1

Query: 427 WQPFN-AGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIYLYRDTNNNP 603
           W P   A NW S   +  A      Y  ++         +   N  L     Y D     
Sbjct: 332 WDPLQIANNWTSRGGRAAAFFMGLTYLVSMIAQNISDNTVAAANDLLYFFPRYLDIRRAQ 391

Query: 604 QIPVPLYFYKVVYEPVLQKGTAFVA 678
            I + +  + +V   +LQ GTAF+A
Sbjct: 392 VIVIIIGAWAIVPWKILQNGTAFLA 416


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +2

Query: 284 RPSWVQNLLANTLQ-IHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTR 460
           RP +    L+ TL  +  I P+    R L     +        +   L  NH++R T   
Sbjct: 771 RPHYTVRTLSRTLSYVTEIAPIYGLRRSLYEGFCMSFLTLLDHTSESLLYNHVVRFTLGE 830

Query: 461 LNRNSVHALVKQ 496
           LNR+  +A++KQ
Sbjct: 831 LNRDQQNAILKQ 842


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/24 (45%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
 Frame = -3

Query: 238 RPQGKNLQQLGLVTP--VW*TALG 173
           + QG++L QLG V+P  +W +A+G
Sbjct: 467 KKQGRSLDQLGFVSPMGIWGSAIG 490


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +3

Query: 99  FYPLYWSCFDQ 131
           FYP+YW C+ Q
Sbjct: 365 FYPIYWVCYGQ 375


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1297

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 535  LRRRFPCKQ*YYILLHQCVHGVSVQASSS 449
            +R +FP     +ILL++C+   +VQ   S
Sbjct: 1179 VRNKFPSDDPAFILLYECLRSSNVQIDES 1207


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 51  YGNNTVIRVGFVINNFFYPLYWSC 122
           YG NT+ ++ +++  F + L+ SC
Sbjct: 60  YGLNTIGKIVYILQIFLFSLFGSC 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,510
Number of Sequences: 5004
Number of extensions: 73516
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)