Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25f11
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322 31 0.88
02_02_0734 + 13500808-13500932,13501194-13501273,13501499-135015... 30 2.0
07_03_0275 - 16160467-16160555,16160695-16160764,16160860-161609... 29 3.5
05_01_0219 + 1638318-1638553,1639186-1639336,1639504-1639611,163... 29 3.5
08_02_0349 - 16077063-16077824,16077891-16078102,16078142-160782... 28 6.2
05_06_0205 - 26364127-26365234,26366677-26367035 28 6.2
04_04_0210 + 23616407-23618851 28 6.2
02_03_0388 + 18429538-18430598,18430971-18431081,18431165-184312... 28 6.2
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 28 8.2
>06_02_0020 - 10675108-10676101,10676204-10676865,10676981-10677322
Length = 665
Score = 31.1 bits (67), Expect = 0.88
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3
Query: 69 IRVGFVINNFFYPLYWSCFDQNRLEVLYAWYEQNPPNAVHQTGVTRP 209
+R+ V+N F W D+N LE + NPPN H G P
Sbjct: 106 LRLAMVLNLFL----WDRNDKNHLEAIGQGTGNNPPNPEHSVGAISP 148
>02_02_0734 +
13500808-13500932,13501194-13501273,13501499-13501537,
13502195-13502532
Length = 193
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 97 FSIHCTGHALTRTAWRF-YMRGTSRIPPMQFTKQELPDLAAGGF 225
F HCT H F Y RG + + P PD++AGG+
Sbjct: 40 FIKHCTRHLTMEVVSLFSYRRGETMVHPYDKEFSMYPDISAGGY 83
>07_03_0275 -
16160467-16160555,16160695-16160764,16160860-16160940,
16161160-16161252,16161430-16161510,16161605-16161694,
16161812-16161905,16162063-16162131,16162205-16162275,
16162545-16162628,16162755-16162847,16162995-16163102,
16163297-16163447,16164026-16164297,16165213-16165218,
16165389-16165613
Length = 558
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1
Query: 510 SSIISCFTNACTEFLFKRVPVTRIKWLPLRGG-IDEKKRGSLTSSKNEVSFRGEVATGHM 334
S + S +TN E L ++VPVT +K P R G + + L SKN + RG G +
Sbjct: 462 SDMTSDWTNEEREMLRRKVPVTGLK-TPFRDGYVRDLAEEILQLSKNGLERRGYKEVGFL 520
Query: 333 L*ICNVFAS 307
+ V +S
Sbjct: 521 REVDAVISS 529
>05_01_0219 +
1638318-1638553,1639186-1639336,1639504-1639611,
1639755-1639847,1639973-1640056,1640314-1640384,
1640461-1640529,1640686-1640779,1640897-1640986,
1641082-1641162,1641341-1641433,1641650-1641730,
1641815-1641884,1642022-1642110
Length = 469
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -1
Query: 510 SSIISCFTNACTEFLFKRVPVTRIKWLPLRGG-IDEKKRGSLTSSKNEVSFRGEVATGHM 334
S + S +TN E L ++VPVT +K P R G + + L SKN + RG G +
Sbjct: 373 SDMTSDWTNEEREMLRRKVPVTGLK-TPFRDGYVRDLAEEILQLSKNGLERRGYKEVGFL 431
Query: 333 L*ICNVFAS 307
+ V +S
Sbjct: 432 REVDAVISS 440
>08_02_0349 -
16077063-16077824,16077891-16078102,16078142-16078204,
16078439-16078865,16078870-16078919,16079006-16079360
Length = 622
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +2
Query: 314 NTLQIHNIWPVATSPRKLTSFLLLVSEPRFFSSMPPLSGNHLMRVTGTRLNRNSVHALV 490
+T + +P+ R +S+ +++P F++ + P+S NHL G +V V
Sbjct: 108 STAFLSKFFPMGVCGRLSSSWDERLADPNFYNGLTPVSRNHLDAAAGGTFFSKTVRGAV 166
>05_06_0205 - 26364127-26365234,26366677-26367035
Length = 488
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)
Frame = +1
Query: 433 PFNAGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQ--LVDIYLYRDTNNNPQ 606
P NA +NS E K G + + + + N +V+IY + NP
Sbjct: 166 PLNADVYNSPENKPVPSAGS--FRKDINALMVDIVNFLNMNNAPFVVNIYPFLSLYQNPN 223
Query: 607 IPVPLYFYKVVYEPVLQKGTAFVAI 681
P+ F+ +PV KG + +
Sbjct: 224 FPLNFSFFDGGSKPVYDKGVVYTNV 248
>04_04_0210 + 23616407-23618851
Length = 814
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 347 ATSPR--KLTSFLLLVSEPRFFSSMPPLSGNHLMRV 448
AT PR L + L L+ PRF S MP +GN R+
Sbjct: 771 ATPPRVVALVAGLYLLRHPRFRSRMPSAAGNFFKRL 806
>02_03_0388 +
18429538-18430598,18430971-18431081,18431165-18431237,
18431513-18431695
Length = 475
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 210 SCWRFFPWGLRQYNVHASSTKNYTSVPR 293
SCW FPW L +++ A + Y S+ +
Sbjct: 350 SCWILFPWVLLLFDLEACTVNVYDSMDK 377
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +1
Query: 430 QPFNAGNWNSLEQKLRARIGEAGYNTTVYTGTFGVTQLRDQNGQLVDIY-LYRDTNNNPQ 606
Q NW LEQKL A+ + T GV L + D Y + DT+N+ Q
Sbjct: 391 QVAGTSNWTKLEQKLVAKGTNRTSRLQITTNKKGVIWLDQISLMPSDTYKVLLDTSNSKQ 450
Query: 607 IPVPLY 624
P Y
Sbjct: 451 KSEPKY 456
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,633,659
Number of Sequences: 37544
Number of extensions: 505325
Number of successful extensions: 1177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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