Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f10
         (474 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   1.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   2.5  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   2.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   3.4  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   4.5  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   4.5  
SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomy...    25   4.5  
SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    25   5.9  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   5.9  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    25   7.8  

>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 286 EKLYEFRQIQMFPVWTQSFVNFIKQTLAYHSAVNYAASGKIFLRDGITDSL 134
           E +  F+ IQ+F    Q    +IK+ L  H       +GKI ++D +  SL
Sbjct: 716 EDVIWFKPIQLFT--KQGRTGYIKEPLGTHGYFKATFNGKITVQDTVAMSL 764


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +2

Query: 302 NTRQDVEALAIKFDNIKESVIDGIRKGKS 388
           ++ QD+E  A   ++I + + +GIR+GKS
Sbjct: 701 DSHQDLELRAAVMNDILDMIPEGIRQGKS 729


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 270 NSYNFSVCWRETQDRTSKHWRLNSIISKKA*STEYEKENHNI 395
           N+Y         +  T +HWR  S +S     + YE+ N  I
Sbjct: 2   NAYEGDTLNNHGKSSTRQHWRKRSAVSSSLEFSSYEESNSPI 43


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 293 TYRKVV*ISTNPNVPCLDSVFRKLHQTNSRLSFCRQLCR 177
           T R +   + NP+V  L S F++  +  S  + C +LC+
Sbjct: 317 TARNLANTADNPSVKGLQSEFQRAFRLMSENNACERLCK 355


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -3

Query: 349  DIIEFNRQCFDVLSCVSRQHTEKLYEFRQIQMF-----PVWTQSFVNFIKQTLAYHSAV 188
            D IE N   FD ++   R     L EFR+I  +       WTQS +   KQ   Y  A+
Sbjct: 1477 DSIE-NYDHFDAIALARRLEKHSLLEFRRIAAYIYRKNKRWTQS-IELSKQDRFYKDAI 1533


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -3

Query: 271 FRQIQMFPVWTQSFVNFIKQTLAYHSA 191
           +  +++F +W   + +F  Q LAY  A
Sbjct: 527 YEDLRVFTIWRAEYTHFKSQGLAYRKA 553


>SPAC2C4.12c |||tRNA 2'-phosphotransferase Tpt1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 22/85 (25%), Positives = 37/85 (43%)
 Frame = +2

Query: 131 SEGVSYAVTKEYFTRSGIIDGRMISESLFDEVYERLSPNREHLDLSKFIQLFGMLARNTR 310
           +EGV+  ++ +YF+R    DG ++ ++       R S   +  D          L   + 
Sbjct: 204 TEGVNGLLSSKYFSRVETSDGEVLLDAKASPKNNR-SDESDQSDPESIDPFCDNLQALSM 262

Query: 311 QDVEALAIKFDNIKESVIDGIRKGK 385
            ++E L  K  N   S  +GI KGK
Sbjct: 263 HELELLEEKHSNFGYS--EGIIKGK 285


>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 31  YVNIIRTNTHYKKENVLKYE 90
           Y  ++RT  + K EN+L YE
Sbjct: 582 YYGLLRTKNYEKNENILIYE 601


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 2/104 (1%)
 Frame = +2

Query: 50  LIRIIKKKMS*NMNLEEIHTILKAVTGSEGVSYAVTKEYFTRSGIIDGRMISESLFDEVY 229
           L+ ++    S +MN E IH I   +   E V            G+  G  + E  F E  
Sbjct: 637 LVDMLFTSFSEDMNRESIHLICDVLKAKESVK--------DSEGMFAGEEVEEDAFGET- 687

Query: 230 ERLSPNREHLDLSKFIQL--FGMLARNTRQDVEALAIKFDNIKE 355
           E    + E +D  +  +   + M++     D E L  K D + E
Sbjct: 688 EMDEDDFEEIDTDEIEEQSDWEMISNQDASDNEELERKLDKVLE 731


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 299 RNTRQDVEALAIKFDNIKESV 361
           RN+R D EA   +FD +K SV
Sbjct: 86  RNSRVDSEARKRQFDRVKHSV 106


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 58  HYKKENVLKYEFRRDTHNIKSRH 126
           HY    + KY ++ DT  IK  H
Sbjct: 98  HYAVLGLSKYRYKADTEQIKKAH 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,188
Number of Sequences: 5004
Number of extensions: 31604
Number of successful extensions: 85
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)