Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f10
         (474 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0467 + 18039458-18039638,18040136-18040227,18040336-180404...    29   2.5  
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876...    28   4.4  
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420...    27   5.8  
01_01_0867 - 6773411-6774682,6775008-6775643                           27   5.8  

>11_04_0467 +
           18039458-18039638,18040136-18040227,18040336-18040452,
           18041228-18041313,18041385-18041643,18041761-18041957,
           18042181-18042213,18043371-18043862,18044236-18044299,
           18045478-18045618,18045726-18045803,18047077-18047166,
           18047260-18047352,18047430-18047489,18047567-18047635,
           18047737-18047823,18048337-18048379,18048517-18048587,
           18049050-18049143,18050335-18050447,18050909-18050998,
           18051075-18051155,18052211-18052291,18052369-18052464,
           18052543-18052599,18052693-18052737,18052807-18052872,
           18052961-18052999
          Length = 1004

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
 Frame = +2

Query: 95  EEIHTILKAVTGSEGVSYAVTKEYFTRSGIIDGRMISESLF-DEVYERLSPNREHLDLSK 271
           +E+  IL+  T  E V      + +  SG++DG +   S F D+  E  +   +H+  S+
Sbjct: 779 KELKLILQYFTAIEQVQLHKEFDRYLASGVLDGDICKFSSFQDDFIEEFAD--KHIAKSQ 836

Query: 272 FIQL 283
           F+QL
Sbjct: 837 FVQL 840


>03_02_0476 +
           8768182-8768313,8768734-8768833,8768949-8768986,
           8769102-8769191,8769465-8769695
          Length = 196

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 373 YSVDHAFFDIIEFNRQCFDVLSCVSRQHTEKLYEFRQIQMFPVWTQSFVNFIKQTLAYHS 194
           Y +D    D + F+R CF    C S   T  L  +  I+  P     F    K+T +Y+ 
Sbjct: 17  YPMDQLSTDGVVFHRSCFKCQHCKS---TLSLGNYSSIEGVPYCKPHFEQLFKETGSYNK 73

Query: 193 A 191
           +
Sbjct: 74  S 74


>03_01_0570 -
           4205739-4205776,4205846-4205897,4205939-4206067,
           4206183-4206258,4206360-4206412,4206494-4206555,
           4206624-4206734,4206813-4206979,4207089-4207268,
           4207598-4207687,4207773-4207921,4208367-4208501,
           4208575-4208630,4208790-4208823,4209409-4209519
          Length = 480

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 373 YSVDHAFFDIIEFNRQCFDVLSCVSRQHTEKLYEFRQIQMFPVWTQSFVNFIK 215
           + ++H+ + +I   +  FD++S V   +TEK  E R   +F  W    + F+K
Sbjct: 189 WGINHSKY-LIAVRKFHFDIVSTVCSYNTEKEVEDRNTTVFTSWVDGEI-FLK 239


>01_01_0867 - 6773411-6774682,6775008-6775643
          Length = 635

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 215 FDEVYERL-SPNREHLDLSKFIQLFGMLA 298
           + E+Y R+ SPN+  L +  FI +FG +A
Sbjct: 266 YTEIYMRIGSPNKSRLHILVFILIFGSIA 294


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,684,281
Number of Sequences: 37544
Number of extensions: 166078
Number of successful extensions: 333
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)