Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f10
         (474 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical pr...    28   3.0  
Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical ...    27   5.2  
Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical p...    27   9.1  
Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical p...    27   9.1  
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction...    27   9.1  
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction...    27   9.1  
AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical ...    27   9.1  
AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z66567-3|CAA91489.1|  444|Caenorhabditis elegans Hypothetical
           protein ZK455.3 protein.
          Length = 444

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 256 MFPVWTQSFVNFIKQTLAYHS 194
           +FP WT S +NF + T AY S
Sbjct: 109 IFPEWTCSMINFFQHTSAYCS 129


>Z81047-9|CAB02835.2|  339|Caenorhabditis elegans Hypothetical
           protein C41G6.11 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/33 (33%), Positives = 22/33 (66%)
 Frame = +3

Query: 249 GNIWICRNSYNFSVCWRETQDRTSKHWRLNSII 347
           GN   C  S+ FS+  ++ + ++ KH++++SII
Sbjct: 45  GNFKFCLLSFQFSIVEKKLKVKSIKHFQVSSII 77


>AF016441-7|AAB65908.1|  344|Caenorhabditis elegans Hypothetical
           protein M03F8.1 protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -3

Query: 367 VDHAFFDIIEFNRQCFDVLSCVSRQHTEKLYEFRQIQ 257
           VDH + D     + CF  L+C+       LY+  Q Q
Sbjct: 275 VDHVYCDTFVSPKVCFLELACIGILFLNNLYDVNQTQ 311


>Z36753-9|CAA85337.1|  445|Caenorhabditis elegans Hypothetical
           protein T09A5.11 protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 280 LYEFRQIQMFPVWTQSFVNFIKQTLAYHSA 191
           LY+ +Q+ + P+W   +  FI+    Y+++
Sbjct: 380 LYDVQQVSVRPLWHTQYERFIRSAYPYYAS 409


>Z80216-11|CAN99667.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 370 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 272
           SV  +F  ++   R+ FD  L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796


>Z80216-10|CAB02286.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 370 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 272
           SV  +F  ++   R+ FD  L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796


>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
            molecule protein1, isoform d protein.
          Length = 1439

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 245  LDSVFRKLHQTNSRLSFCR 189
            LDS+F+K+  TN RL+F R
Sbjct: 1173 LDSIFQKVTPTNQRLNFDR 1191


>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
            molecule protein1, isoform a protein.
          Length = 1480

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -2

Query: 245  LDSVFRKLHQTNSRLSFCR 189
            LDS+F+K+  TN RL+F R
Sbjct: 1214 LDSIFQKVTPTNQRLNFDR 1232


>AL023823-2|CAN99714.1|  984|Caenorhabditis elegans Hypothetical
           protein F10G8.8b protein.
          Length = 984

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 370 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 272
           SV  +F  ++   R+ FD  L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796


>AL023823-1|CAA19441.4|  949|Caenorhabditis elegans Hypothetical
           protein F10G8.8a protein.
          Length = 949

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 370 SVDHAFFDIIEFNRQCFDV-LSCVSRQHTEKLYE 272
           SV  +F  ++   R+ FD  L CV ++H E+L E
Sbjct: 763 SVKTSFSQMLAEQRKTFDEELDCVKKEHEERLME 796


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,101,207
Number of Sequences: 27780
Number of extensions: 169969
Number of successful extensions: 542
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)