Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f10
         (474 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.18 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    26   0.18 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.55 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.2  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   3.8  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.7  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 224 VYERLSPNREHLDLSKFIQLFGMLARNTRQDVEALAIKFDNIKESVID 367
           +YE L    E   L++ +  +  L R    + E L +KF    + +ID
Sbjct: 46  IYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIID 93


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = +2

Query: 224 VYERLSPNREHLDLSKFIQLFGMLARNTRQDVEALAIKFDNIKESVID 367
           +YE L    E   L++ +  +  L R    + E L +KF    + +ID
Sbjct: 46  IYESLCGRHEKRLLNELLSSYNTLERPVANESEPLEVKFGITLQQIID 93


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 24.6 bits (51), Expect = 0.55
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 140  VSYAVTKEYFTRSGIIDGRMISESL 214
            V+  V  +YF++ G+I+  M+S+ L
Sbjct: 971  VNETVCSDYFSQGGVIESIMVSDYL 995


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 176 SGIIDGRMISESLFDEVYERLSPNREHLDLS 268
           SGI      S S   + YER SP+   +DLS
Sbjct: 29  SGIPHSAESSASNSPDHYERFSPSTHLMDLS 59


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 376 KRKIIILIKYGRLQYASTR 432
           K KI++LI YG + ++ T+
Sbjct: 18  KVKIVLLIFYGSIMFSMTQ 36


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 265 VEIHTTFRYVGAKHKTGRR 321
           VE  + FRY+GA+ K   R
Sbjct: 300 VEKRSPFRYLGARGKKNPR 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,091
Number of Sequences: 438
Number of extensions: 2544
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)