Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25f07
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   2.7  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   8.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +3

Query: 318 RSSRRLYLISQERFVKCSKRDAQKQALTRATRYSRYTTPKERTGRHYRTD 467
           R   R Y     R+ K    + +K+ L   T   RY+  +ER  + Y+ +
Sbjct: 239 RDRNREYKKKDRRYEKL--HNEKKKLLEERTSRKRYSRSREREQKSYKNE 286


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -2

Query: 494 WWWNSKPSRI 465
           WWWN K S +
Sbjct: 366 WWWNMKISNL 375


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 240  RFTKHNRRVPWTG*GNLPAMALVQPHRSSRRLYLISQERFV 362
            R   H+R +P     + PA  +++   +SRR+ ++    F+
Sbjct: 1096 RLCLHHRDLPCVLRASTPAPVVLEAVHASRRVLIVLTRNFL 1136


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 369 SKRDAQKQALTRATRYSRYTTPKERTGRHYRTDTRR 476
           S R   +     ++ +SRY   +   G  YR D  R
Sbjct: 216 SLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGER 251


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = +2

Query: 374 ERRTKAGIDKSYPLQPIHNTERTNRKTLPNGYAKVSNS 487
           ER  +  I  S   + IHN    N     N Y   +N+
Sbjct: 307 ERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNN 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,083
Number of Sequences: 438
Number of extensions: 3494
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)