Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e22
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   4.1  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    23   4.1  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    23   4.1  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    23   5.4  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    23   7.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    22   9.4  

>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 142 PNQFINKLITFLCSCVVVFNLLVLYNII 59
           P  F N  I  L + +V+F LL+ + +I
Sbjct: 399 PRCFFNSTIATLITIIVIFILLLSFPVI 426


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 133 FINKLITFLCSCVVVFNLLVLYNIITP 53
           F+N ++  L  CV  +NLL   N + P
Sbjct: 143 FMNSILQALMYCVPFYNLLKQINRMVP 169


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 139 NQFINKLITFLCSCVVVF-NLLVLYNIITPS 50
           +QF+ +  T +CS V+ F  +L+L     PS
Sbjct: 152 DQFLGRYNTIVCSAVIYFIGILILTCTAIPS 182


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +3

Query: 24  QEASYCPLPLGVIIL*STSRLKTTTQEH 107
           ++ + CPL +  ++L + S L+  +Q+H
Sbjct: 171 KDVTLCPLEMFFLLLNNASALRDISQKH 198


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 41  STATRCYNIVKHKQIEDHNARTQKSD*FINK 133
           S   R ++ V H  IE  +A   K D F+N+
Sbjct: 204 SNIERYFSAVNHSAIELSDALNSKIDDFLNE 234


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 145 FPNQFINKLITFLCSCVVVFNLLVLY 68
           FPN     L+  LC  + +FNL++L+
Sbjct: 249 FPNVLPQVLL--LCPSISIFNLILLH 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,099
Number of Sequences: 5004
Number of extensions: 9438
Number of successful extensions: 22
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 39
effective length of database: 2,167,322
effective search space used: 41179118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)