Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e22
         (176 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0611 - 4567839-4568144,4568280-4569209,4569301-4569566,456...    27   1.6  
05_01_0347 - 2717275-2717613,2717994-2718077,2718185-2718247,271...    25   8.6  

>02_01_0611 -
           4567839-4568144,4568280-4569209,4569301-4569566,
           4569662-4569970,4570497-4570647,4570958-4571012,
           4571137-4571512,4571560-4571797,4571878-4572096,
           4572629-4572910
          Length = 1043

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 106 CSCVVVFNLLVLYNIITPSGSGQYDA 29
           C C++   ++ L+ ++ P   G+Y A
Sbjct: 289 CDCLITLGIITLFMVLLPDPEGKYQA 314


>05_01_0347 -
           2717275-2717613,2717994-2718077,2718185-2718247,
           2718350-2718488,2719118-2719219,2719324-2719424,
           2719915-2719981,2720074-2720120,2720246-2720440,
           2720523-2720569,2721242-2721339,2722219-2722337,
           2722438-2722611
          Length = 524

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 130 INKLITFLCSCVVVFNLL 77
           IN  +  LCSC+V+ +LL
Sbjct: 26  INIFVALLCSCIVIGHLL 43


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,411,079
Number of Sequences: 37544
Number of extensions: 55816
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 14,793,348
effective HSP length: 38
effective length of database: 13,366,676
effective search space used: 267333520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)