Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e22
         (176 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.11 
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   0.45 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   1.8  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   1.8  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   1.8  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   1.8  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    20   2.4  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    20   2.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   3.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   5.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    19   5.5  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    19   5.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    19   5.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    19   5.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    19   7.3  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    18   9.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    18   9.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 0.11
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 3   VSENGITQEASYCPLPLGVIIL*STSRLKTTTQEH 107
           V +NGI+ E S CP  + V  L ++  LK     H
Sbjct: 138 VLDNGISGETSVCPSQIVVFDLKNSKLLKQVKIPH 172


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 0.45
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 154 LI*FPNQFINKLITFLCSCVVVFNLLVLYNIITPSGSGQ 38
           LI FP + + +L+      ++V +L+     + P GSG+
Sbjct: 95  LISFPGELLMRLLKMFILPLIVSSLISGMAQLDPKGSGR 133


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -3

Query: 96  LWSSICLCF 70
           +W  +C+CF
Sbjct: 365 VWDGVCMCF 373


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -3

Query: 96  LWSSICLCF 70
           +W  +C+CF
Sbjct: 334 VWDGVCMCF 342


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -3

Query: 96  LWSSICLCF 70
           +W  +C+CF
Sbjct: 385 VWDGVCMCF 393


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -3

Query: 96  LWSSICLCF 70
           +W  +C+CF
Sbjct: 334 VWDGVCMCF 342


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 9   ENGITQEASYCPLPLGVII 65
           ENG+T E++   L  G++I
Sbjct: 120 ENGLTSESTDPGLVAGIVI 138


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 9   ENGITQEASYCPLPLGVII 65
           ENG+T E++   L  G++I
Sbjct: 91  ENGLTSESTDPGLVAGIVI 109


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 14  WNYSGGVVLSTAT 52
           W Y GG +  TAT
Sbjct: 163 WIYGGGFMSGTAT 175


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 14  WNYSGGVVLSTAT 52
           W Y GG +  TAT
Sbjct: 163 WIYGGGFMSGTAT 175


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 3   VSENGITQEASYCPLPLGV 59
           +S+NG T+E +     LGV
Sbjct: 127 ISKNGQTREHALLAFTLGV 145


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 3   VSENGITQEASYCPLPLGV 59
           +S+NG T+E +     LGV
Sbjct: 54  ISKNGQTREHALLAFTLGV 72


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 3   VSENGITQEASYCPLPLGV 59
           +S+NG T+E +     LGV
Sbjct: 70  ISKNGQTREHALLAFTLGV 88


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 3   VSENGITQEASYCPLPLGV 59
           +S+NG T+E +     LGV
Sbjct: 127 ISKNGQTREHALLAFTLGV 145


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 59  YNIVKHKQIE 88
           YNI+  KQIE
Sbjct: 540 YNIIHFKQIE 549


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 94  VVFNLLVLYNIITPSGSGQYDA 29
           V+  LLV+    TPS    YD+
Sbjct: 348 VLPRLLVMRRYNTPSKRSDYDS 369


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -3

Query: 96  LWSSICLCF 70
           +W+ +CL F
Sbjct: 306 IWTGVCLTF 314


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 18.2 bits (35), Expect = 9.6
 Identities = 4/9 (44%), Positives = 7/9 (77%)
 Frame = -3

Query: 96  LWSSICLCF 70
           +W+ +CL F
Sbjct: 306 IWTGVCLTF 314


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,992
Number of Sequences: 438
Number of extensions: 636
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 38
effective length of database: 129,699
effective search space used:  2593980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)