Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e19
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...   177   2e-45
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.32 
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    26   6.8  
SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   9.0  

>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score =  177 bits (430), Expect = 2e-45
 Identities = 85/198 (42%), Positives = 115/198 (58%)
 Frame = +1

Query: 169 SGEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDI 348
           +G    ++TR            DFRRICILKG+YPREP+N+K+A KG+    T Y+TKDI
Sbjct: 10  AGAARIYITRNQALKKLQLTLADFRRICILKGVYPREPKNKKKANKGSTAPVTFYYTKDI 69

Query: 349 KFLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVXX 528
           ++LLHEPI+ K RE KV+ +K+ +A  + E    ++     P  ++DHI+KERYPTF   
Sbjct: 70  QYLLHEPIVQKFREYKVFARKLSKALGKGELETAKRLEARKPTYSLDHIIKERYPTFHDA 129

Query: 529 XXXXXXXXXXXXXXSTFPSLKKVPRDQSFLCRRLTVEFMHAVIAAKALRKVFVSVKGFYY 708
                         ST P   K+       C RL  EF H VI + +LRK F+S+KG YY
Sbjct: 130 LKDIDDALSMLFLFSTMPVTDKIGAATVANCERLCAEFQHYVIRSNSLRKAFLSIKGIYY 189

Query: 709 QVEFEGQTITWIVPHHFS 762
           Q E  G+ ITWIVP+ F+
Sbjct: 190 QAEIFGEQITWIVPYKFA 207


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -3

Query: 522 NKRGVSFLYYVINVYFWIVPQKLS 451
           NK+G+S+   VI  + W+V QKLS
Sbjct: 278 NKKGLSYFKAVIRAFEWLVEQKLS 301


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 513 HVC*RFARFGRLSHIVLPIQYFPIIEKSS 599
           H+C   + FG +++IV+P+     +EK S
Sbjct: 236 HICFNSSIFGWVTNIVIPVTEIVSVEKKS 264


>SPBC83.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 161

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -1

Query: 572 LNRKHNVRQSSKSRKASTNVGYLSFTM*SMFISG 471
           +NR H +R S +S +   +VG++ ++  + ++SG
Sbjct: 76  INRYHGLRFSRQSSQEYDSVGHILYSPITYYVSG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,348
Number of Sequences: 5004
Number of extensions: 74265
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)