Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e19
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0803 + 27829438-27829461,27829558-27829643,27829960-278300...   144   5e-35
02_01_0074 + 519401-519512,519513-519548,519647-519706,519785-51...    33   0.33 
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    29   5.4  
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...    29   5.4  
07_03_1451 - 26623913-26624123,26624504-26624593,26624691-266249...    28   9.4  

>03_05_0803 +
           27829438-27829461,27829558-27829643,27829960-27830088,
           27830806-27830925,27831007-27831132,27831349-27831433,
           27831538-27831648,27832215-27832308,27832448-27832728,
           27832840-27832947,27833163-27833284,27833825-27834035,
           27834149-27834376,27834591-27834680
          Length = 604

 Score =  144 bits (350), Expect = 5e-35
 Identities = 72/196 (36%), Positives = 110/196 (56%), Gaps = 2/196 (1%)
 Frame = +1

Query: 172 GEGAQFMTRXXXXXXXXXXXXDFRRICILKGIYPREPRNRKRAQKGAGGIKTLYHTKDIK 351
           G  A+++TR             FR++CILKG++PR+P+     +K  G  KT YH KDI 
Sbjct: 14  GNAAKYITRTKAVKYLQISLATFRKLCILKGVFPRDPK-----KKVEGNHKTYYHMKDIA 68

Query: 352 FLLHEPIIWKLRELKVYQQKIRRARAQREYGKMRKFLRDYPEINIDHIVKERYPTFVXXX 531
           FL H+P+I K RE+KV+++K+++A A++      + L   P   +D ++ ERYPTFV   
Sbjct: 69  FLAHDPLIEKFREIKVHRKKVKKAFAKKNKDLADRLLNRPPTYKLDRLILERYPTFVDAL 128

Query: 532 XXXXXXXXXXXXXSTFPSL--KKVPRDQSFLCRRLTVEFMHAVIAAKALRKVFVSVKGFY 705
                        +  P++  ++V   +   CRRL+ E+   +    +LRK F+SVKG Y
Sbjct: 129 RDLDDCLTMVHLFAALPAVEGERVQVQRIHNCRRLSHEWQAYISRTHSLRKTFISVKGIY 188

Query: 706 YQVEFEGQTITWIVPH 753
           YQ E +GQ ITW+ PH
Sbjct: 189 YQAEVQGQKITWLTPH 204


>02_01_0074 +
           519401-519512,519513-519548,519647-519706,519785-519877,
           519968-520033,520146-520223,520300-520407,520478-520554,
           520632-520706,520792-520799,520981-521098,521199-521625,
           521627-521661
          Length = 430

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +3

Query: 84  TTKQKTFTYYFLNKDNNHNGVQKEEEVFFRRRSSVYDQKSSA*ETTTILERFQTYL-YFE 260
           T K++      LNK  + +G+Q  E+ + R RS + D K S+  ++T        L   +
Sbjct: 51  TAKKQQLIDLDLNKKISQSGLQLIEQNYNRTRSFIIDAKKSSTRSSTAQSGILKDLRERD 110

Query: 261 RNIPPRT*KPKEGSKRCRRNQNTL 332
           +NI  +T    EG     +N NT+
Sbjct: 111 KNIEKKTISKDEGLGLLEQNYNTM 134


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 510 VSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 376
           +  L++VI+  F + P  L H+ +     C  N LL+     Q+P
Sbjct: 297 LEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 341


>02_01_0177 +
           1214226-1214294,1214707-1214794,1216095-1216308,
           1216413-1216738,1216860-1217013,1217377-1217438,
           1218078-1218133,1219456-1221279,1221775-1222698,
           1222855-1222866
          Length = 1242

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 510 VSFLYYVINVYFWIVPQKLSHLAIFSLCSCTTNFLLINL*FPQFP 376
           +  L++VI+  F + P  L H+ +     C  N LL+     Q+P
Sbjct: 611 LEILFHVISAQFDVNPSLLGHMPVNMWKKCVNNMLLVLDILQQYP 655


>07_03_1451 -
           26623913-26624123,26624504-26624593,26624691-26624920,
           26625692-26625794,26625908-26626150,26626263-26626352,
           26626537-26626808
          Length = 412

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 535 LAKRQQTWGIFPLLCDQCLFLDSPAKTFSSCHILA 431
           +A  ++T G F  L D+C F DS +  F++ H L+
Sbjct: 297 IASNERTPGFFSPLSDRCDFSDSCSHGFTTAHGLS 331


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,033,045
Number of Sequences: 37544
Number of extensions: 406682
Number of successful extensions: 800
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)