Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e14
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    27   1.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.8  
SPAC19G12.02c |pms1||MutL family mismatch-repair protein Pms1|Sc...    26   5.0  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   5.0  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   5.0  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   8.7  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    25   8.7  

>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +2

Query: 455 DIYSDAGPGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEEPIPARPSVSYDDLR 613
           DI S AGP S L  +           +PD +    +L  P       SY+D+R
Sbjct: 611 DILSPAGPDSQLPPEPPTLQVDRTPQQPDPQETSESLPSPNTEEMGESYNDIR 663


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 425 TPSMYGATTNDIYSDAGPGSSLDLDTNRPVFSEDTYRPDNE 547
           TP+    T N+ Y+ A P  S   D    VFS+ ++  + +
Sbjct: 469 TPTASSTTANNAYASAEPHPSAFPDDMNSVFSDSSFERERD 509


>SPAC19G12.02c |pms1||MutL family mismatch-repair protein
           Pms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 794

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +2

Query: 479 GSSLDLDTNRPVFSEDTYRPDNEGPGPNLEEP--IPARPSVSYDD 607
           G ++    ++ +FS  +  PD+ G   + E P  IPA  S + DD
Sbjct: 335 GHAISCSRSQSIFSYSSQIPDSSGDSTDQELPQSIPATESETSDD 379


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +2

Query: 347 LPGSYIGQILRDRKNGKIGGT--SMPVQTPSMYGATTNDI 460
           LP SY   +     N  +  T  S PV TPS Y AT ND+
Sbjct: 99  LPSSYKYLLSNSGANFTLQFTTPSGPVSTPSTYVATYNDL 138


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 476 PGSSLDLDTNRPVFSEDTYRPDNEGPGPNLEEPIPARPSVSYDDL 610
           P S  D+  +RP+   D   P+   P P   EPIP      +++L
Sbjct: 254 PLSQYDIPFSRPILEFDDPSPETVHPEP---EPIPTPSDAIHNEL 295


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 574 GFLQVGSWTFIIRSVSILAEDRSVGVQV 491
           GF  V +W+F+I ++  L  D   G+ +
Sbjct: 435 GFTSVAAWSFVITAIICLLVDLVPGLHI 462


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 303 GSCHTSRHVLRS*WHCPA 356
           G CHT  H L+  W  PA
Sbjct: 44  GVCHTDLHALQGDWPLPA 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,054
Number of Sequences: 5004
Number of extensions: 56189
Number of successful extensions: 169
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)