Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25e12
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 34 0.12
12_02_1243 + 27300978-27301682 30 2.0
03_05_0677 + 26663880-26664581 30 2.0
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 30 2.0
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501... 30 2.0
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 28 6.2
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250... 28 6.2
05_05_0173 + 22956927-22958615 28 6.2
10_08_0304 - 16640937-16642877 28 8.2
05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583 28 8.2
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 28 8.2
01_06_1224 - 35508842-35510404 28 8.2
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 479 CSRCLQMINENNKIEIDKQAFHSHCAKCYFC-HTVPSSNIHICYGQVFCEPCFQ 637
C C + + +++ D FH C KC C T+ N G +C+P F+
Sbjct: 9 CKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLSLGNYSSIEGVPYCKPHFE 62
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +2
Query: 479 CSRCLQMINENNKIEIDKQAFHSHCAKCYF--CHTVPSSNIHICYGQVFCEPCFQHHVLH 652
C+ C + K+ ++ QA+H C KC C P SN G ++C+ F L
Sbjct: 108 CATCSKTAYPLEKVTVEGQAYHKSCFKCSHGGCAISP-SNYAALEGILYCKHHFSQ--LF 164
Query: 653 RHKDNPNEFFK 685
+ K + N K
Sbjct: 165 KEKGSYNHLIK 175
>12_02_1243 + 27300978-27301682
Length = 234
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 557 KCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNP 670
+C C +P I G +FC PC + LH H +P
Sbjct: 24 ECNICFELPQEPIVTLCGHLFCWPCL-YKWLHIHSHSP 60
>03_05_0677 + 26663880-26664581
Length = 233
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 557 KCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNP 670
+C C +P I G +FC PC + LH H +P
Sbjct: 23 ECNICFELPQEPIVTLCGHLFCWPCI-YRWLHIHAHSP 59
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/54 (20%), Positives = 25/54 (46%)
Frame = +2
Query: 401 GNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKC 562
G E + G + +S + + C+ C + + K+ ++ +++H C KC
Sbjct: 80 GKSSEKSDQGRAPSKLSSAFSGTQDKCAACQKTVYPLEKLTLEGESYHKSCFKC 133
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +2
Query: 479 CSRCLQMINENNKIEIDKQAFHSHCAKCYFCH-TVPSSNIHICYGQVFCEPCFQ 637
C C + ++ + + D ++H C KC C T+ N G ++C+ F+
Sbjct: 10 CKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLSMCNYSSMDGVLYCKTHFE 63
>02_03_0412 -
18749430-18749587,18749696-18749857,18750062-18750194,
18751640-18751744,18751818-18751935,18752232-18752320,
18752407-18753660,18753785-18753831,18754285-18754339,
18754783-18754884
Length = 740
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +2
Query: 539 FHSHC-AKCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNPNEFFKQC 691
++S C +C C P G ++C PC ++L +D E +K+C
Sbjct: 224 YYSPCEVQCPICLESPLCPQITSCGHIYCFPCILRYLLMGKEDYKGESWKKC 275
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +2
Query: 557 KCYFCHTVPSSNIHICYGQVFCEPCFQHHVLHRHKDNP 670
KC C P + +FC PC Q ++ RH+ P
Sbjct: 736 KCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRHRKCP 773
>07_01_0346 -
2501825-2501908,2502143-2502244,2502623-2502646,
2502693-2502819,2503122-2505109,2505804-2505821
Length = 780
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +2
Query: 359 SVHTNWAQWTCG---KFGNGQEGDNPGASSKSEASEGNTKRSVCSRCLQMINENN 514
S H ++ W+ G KF + G+ SS E T++SVC R ++I+E +
Sbjct: 269 SKHEHFGNWSSGWKHKFFGKKSGEERTPSSNEENISSATQKSVCPR--EVISEKS 321
>05_05_0173 + 22956927-22958615
Length = 562
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Frame = +2
Query: 557 KCYFCHTVPSSNIHICYGQVFCEPCFQH--HVLHRHKDNP 670
+C C + S + G +FC PC HV HK+ P
Sbjct: 237 ECNICFEMASEPVVTSCGHLFCWPCLYQWLHVHSTHKECP 276
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +2
Query: 296 HVFCNGCFKQHVLDRFRGECPSVHTNWAQWTCGKFGNGQEGDNPGASSKSEAS 454
H F C V R R CP H W + F G + PGAS+ + AS
Sbjct: 31 HQFHFHCISGTVA-RGRIACPLCHARWRE--LPSFRRGNDAAPPGASASASAS 80
>05_05_0204 + 23241555-23241696,23241770-23242910,23243058-23243583
Length = 602
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = -3
Query: 289 EHLHRRRNCSADATRAANSMKALPCYFNGVFRIHR*KTSSTKWL 158
E H R CS AT A ++ +PC + I + + WL
Sbjct: 8 ETTHNRAYCSEAATAIAVAVAVVPCIYRRATEISHKYSGAAHWL 51
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 27.9 bits (59), Expect = 8.2
Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Frame = +2
Query: 410 QEGDNPGASSKSEASEGNTKRSVCSRCLQMINENNKIEIDKQAFHSHCAKCYFCHTVPSS 589
+E GA K E E NT S +M + NNK + K + C+ C
Sbjct: 62 KESKKRGAGKKQEEEENNT----ISIEDEMCDANNK-KGKKMLTGENALMCHQCQRNDKG 116
Query: 590 NI---HICYGQVFCEPCFQ 637
+ C + FCEPC +
Sbjct: 117 RVIWCKSCNNKRFCEPCMK 135
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 521 EIDKQAFHSHCAKCYFCHTVPSSNIHICYGQVFCEPCFQH--HVLHRHKDNP 670
E ++Q + +C C + S + G +FC PC +V HK+ P
Sbjct: 181 ESEEQGRSAATFECNICFDMASEPVVTSCGHLFCWPCLYQWLNVYSNHKECP 232
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,958,730
Number of Sequences: 37544
Number of extensions: 403848
Number of successful extensions: 1311
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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