Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25e10
(727 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 28 1.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 28 1.6
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 27 2.1
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 27 2.1
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 2.7
SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 27 3.6
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 27 3.6
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 27 3.6
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB... 26 4.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 6.3
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 26 6.3
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 25 8.3
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 8.3
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +1
Query: 124 KNLKVGTKNVIRKKLISPEKILLPPLHIKLGMMKEFVKALDKNNASFE 267
K ++V +N K ++ E+I+ L I+LG++ VK D N+SFE
Sbjct: 631 KEMEVLCENNDLSKQLTSEEIVHMKLLIQLGLLSVKVKNGDYENSSFE 678
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 232 VKALDKNNASFEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKFDVTMNNTESDAWLAF 411
+ ++D + F Y+C+++PR AKI D + ++ F +N D F
Sbjct: 60 IPSIDLPPSFFNYVCEQLPRHPFAKIASSYIDTHTLFFQISISSFLCRFSNCSEDEIRLF 119
Query: 412 K--DAVNNFL 435
K ++++FL
Sbjct: 120 KQHQSLDSFL 129
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +1
Query: 205 IKLGMMKEFVKALDKNNASFEYLCKKIPRLSD--AKIKEGVFDGPQIRSLMADEKFDVTM 378
++ G +KE V ++N FE + +K P + AK G+ Q+RS + E F+ T+
Sbjct: 334 LRCGFLKEAVDFTEENRDLFEKVAEKFPFYINAYAKAPNGILP-RQLRSQLFSE-FNQTI 391
Query: 379 NNTESDAWLAFKDAVNNFLG 438
ES +K AV +G
Sbjct: 392 RLQESSD--PYKYAVYKIIG 409
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 379 NNTESDAWLAFKDAVNNFLGNN-KHPDYKNKVANLLDKYQKLGC 507
+N+ + L K VN LG+ H D+KN++ ++ +++L C
Sbjct: 662 SNSVTHRALLLKLCVNKLLGSLLDHNDFKNRLETAIETFRELPC 705
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 463 NKVANLLDKYQKLGCNMSIKLHFLDSHVDFF 555
N+V N L Q + + ++HFL++H+ F
Sbjct: 80 NRVCNALALLQCIASHPETRIHFLNAHITLF 110
>SPAPB18E9.01 |trm5||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 435
Score = 26.6 bits (56), Expect = 3.6
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +1
Query: 199 LHIKLGMMKEFVKALDKN--NASFEYLCKKI-PR---LSDAKIKEGVFDGPQIRSL--MA 354
LH MK F+K LDKN ++ + K+ P+ L + K+ + D P+++ +
Sbjct: 15 LHPNKVEMKPFLKNLDKNLFKKTYNLVAAKVSPKKVGLLNKVCKKDLLDWPRVKHVYQQN 74
Query: 355 DEKFDVTMNNTESDAWLAFKDAVNNFLGNN 444
+EK + + D DA +F+ N
Sbjct: 75 NEKLVLLNRDASLDGTRGLSDATVSFIKEN 104
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Frame = -1
Query: 604 DETFLPVLHCNH-----QDYQEK-SPHVNLESGVLCSYYTPIFDTYPISLQPYFYSRDVY 443
+ETFLP L Q+ EK S HV+ ES + + ++D L P + Y
Sbjct: 418 NETFLPKLKAERELLSKQESMEKQSMHVDEESNQILEKFLDVYDIIKAKLPPNVAEKVDY 477
Query: 442 Y 440
Y
Sbjct: 478 Y 478
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +1
Query: 394 DAWLAFKDAVNNFLGNNKHPDYKNK 468
D+W F D NN HPDY+NK
Sbjct: 524 DSW--FNDTENNGHAQWVHPDYRNK 546
>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 588
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 427 NFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVDFFPDNL 567
+++ + KHP+YKN ++KY K G K+ D F +N+
Sbjct: 78 HYVSSPKHPNYKN-----IEKYLKPGWLFGQKVDSADFQYSAFRENM 119
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = +2
Query: 458 IKIRLQTYWISI---KNWGVI*A*NSTF*IHMWTFFLIILVITV 580
I + LQ YW+S ++W + + ++ +H W FL++++ V
Sbjct: 2190 ISVFLQNYWMSSVYGRSWAFMWSAHN---VHKWAMFLLVILFYV 2230
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 410 NASQASDSVLFIVTSNFSSAIKDLICGPSNTPSLIFASDNLGI 282
+ S+ +D +L V + S ++ GP +TP+L F S + GI
Sbjct: 430 SVSKGADDILQHVL-HLKSEQTGVVVGPDSTPTLSFTSGSEGI 471
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 262 FEYLCKKIPRLSDAKIKEGVFDGPQIRSLMADEKF 366
F K +LSD K E + P+ SL+AD F
Sbjct: 127 FNPFAKLGSQLSDPKFMEKLASNPETASLLADSAF 161
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.3
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 6/174 (3%)
Frame = +1
Query: 208 KLGMMKEFVKALDKNNASFEYLCKKIPRL------SDAKIKEGVFDGPQIRSLMADEKFD 369
++ +K VKALDK +FE + + L S+ K+K G F + L A D
Sbjct: 73 EINELKNAVKALDKRFDNFELKLEALFSLLRSQQDSERKVKPGGFPSLVSQILSAGALVD 132
Query: 370 VTMNNTESDAWLAFKDAVNNFLGNNKHPDYKNKVANLLDKYQKLGCNMSIKLHFLDSHVD 549
+ +N L + P +K+ ++ DK C LD +
Sbjct: 133 SKLQAYTMRTNFFSNGFSSNDLFPHSFPTWKSAFRDVPDKDWAKTC--------LDWYFR 184
Query: 550 FFPDNLGDYSEEQGERFHQDIKTMETRYQGQWNVNMMADYCWSLTRDITEDTHK 711
F N + ++Q + + + +G W V+ A +++RD D K
Sbjct: 185 FINCNWPIFYKKQYMESFEKLYIDKNLVKGAWIVSFYAILALAVSRDKRVDNSK 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,950,801
Number of Sequences: 5004
Number of extensions: 67153
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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