Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e07
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    28   1.6  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   6.3  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   6.3  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   8.3  
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    25   8.3  

>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 664 RSSHKVHSQFSHFNNLKYFRN 602
           R S  +HS F HFN++K  +N
Sbjct: 333 RPSKNIHSMFQHFNSMKKNKN 353


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +2

Query: 206 KNLDNDVPYFKTMASTTENVAIYV-WDQLQRIMEKPQLLHEVK 331
           +NLD + P F+       NV +++ +DQ   IM +P LLH++K
Sbjct: 512 ENLDAEDPLFRA------NVHLHMTYDQAIIIMSRPVLLHKMK 548


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/73 (19%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +2

Query: 170 YIKTAILEPLDHKNLDNDVPYFKTM-ASTTENVAIYVWDQLQRIMEKPQLLHEVKILETE 346
           Y+      PLD++ LD+ +P+F  +  +       Y W+  + +    Q +    ++  +
Sbjct: 102 YMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEI--ASVINAD 159

Query: 347 KNHVVYRGGNTYS 385
              +++  G T S
Sbjct: 160 PREIIFTSGATES 172


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 320 HEVKILETEKNHVVYRGGNTY 382
           HE ++   +K H  YRGG +Y
Sbjct: 305 HEAELRNNDKFHYRYRGGESY 325


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 131 QTGMVMNITDLKKYIKTAILEPLDHKNLDND 223
           Q G +    DL  +I   +    +HK LDND
Sbjct: 89  QQGQIETKPDLTLFINELLTTKKEHKKLDND 119


>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 682 F*SVIIRSSHKVHSQFSHFNNLKYFRNIIYVIIMF 578
           F ++I+    +   Q S FN+L YF + I+ ++ F
Sbjct: 336 FRALILACGLQAMQQLSGFNSLMYFSSTIFEVVGF 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,270
Number of Sequences: 5004
Number of extensions: 61087
Number of successful extensions: 154
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)