Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e07
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0978 + 7738232-7740848,7740929-7741320                           30   2.2  
03_02_0168 + 6094658-6096220,6096335-6096608,6096671-6096821,609...    29   3.8  
06_02_0239 + 13384451-13387124,13387234-13387631                       29   5.0  
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    28   8.7  

>01_01_0978 + 7738232-7740848,7740929-7741320
          Length = 1002

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
 Frame = +2

Query: 77   TYCIIILFLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPY-FKTMAST 253
            ++ +++L LVT K PVDP+ G      DL K++ + I +      LD+ +   FK   + 
Sbjct: 888  SFGVVLLELVTGKPPVDPEFGE----KDLVKWVCSTIDQKGVEHVLDSKLDMTFKDEINR 943

Query: 254  TENVAIYVWDQLQRIMEKPQLLHEVKILE 340
              N+A+     L   + +P +   VK+L+
Sbjct: 944  VLNIALLCSSSLP--INRPAMRRVVKMLQ 970


>03_02_0168 +
           6094658-6096220,6096335-6096608,6096671-6096821,
           6097052-6097262,6097344-6097550,6097982-6098350
          Length = 924

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 208 LMVEWFQDGCFYVFLEVSYIHHHTSLR 128
           L+V W+Q G FY F    + HH T  R
Sbjct: 632 LLVRWYQVGAFYPFFR-GHAHHDTKRR 657


>06_02_0239 + 13384451-13387124,13387234-13387631
          Length = 1023

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 77  TYCIIILFLVTVKGPVDPQTGMVMNI 154
           +Y +++L ++T K PVDPQ G  MN+
Sbjct: 907 SYGMLLLEMITGKRPVDPQFGGDMNL 932


>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 77  TYCIIILFLVTVKGPVDPQTGMVMNITDLKKYIKTAILEPLD 202
           +Y I++L ++T K PVD   G  MN   L+K+++ +I    D
Sbjct: 857 SYGIMLLEMITGKSPVDQMFGGEMN---LEKWVRASIPHQAD 895


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,974
Number of Sequences: 37544
Number of extensions: 306715
Number of successful extensions: 574
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)