Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e07
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical ...    93   2e-19
AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical ...    93   2e-19
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    29   2.6  
Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AF000196-6|ABC71844.1|  137|Caenorhabditis elegans Hypothetical
           protein B0041.6b protein.
          Length = 137

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/89 (47%), Positives = 65/89 (73%)
 Frame = +2

Query: 104 VTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWD 283
           V ++G VDP +GMV ++  LKK + + +L+ +DH+NLD DV +FKT  ST+ENVAIY+++
Sbjct: 49  VKLRGEVDPTSGMVYDLAKLKKEM-SLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFE 107

Query: 284 QLQRIMEKPQLLHEVKILETEKNHVVYRG 370
           +L+ +M  P +L++V I ET KN   Y+G
Sbjct: 108 KLKSVMSNPSVLYKVTIEETPKNIFTYKG 136


>AF000196-5|AAC24255.2|  140|Caenorhabditis elegans Hypothetical
           protein B0041.6a protein.
          Length = 140

 Score = 93.1 bits (221), Expect = 2e-19
 Identities = 42/89 (47%), Positives = 65/89 (73%)
 Frame = +2

Query: 104 VTVKGPVDPQTGMVMNITDLKKYIKTAILEPLDHKNLDNDVPYFKTMASTTENVAIYVWD 283
           V ++G VDP +GMV ++  LKK + + +L+ +DH+NLD DV +FKT  ST+ENVAIY+++
Sbjct: 52  VKLRGEVDPTSGMVYDLAKLKKEM-SLVLDTVDHRNLDKDVEFFKTTVSTSENVAIYMFE 110

Query: 284 QLQRIMEKPQLLHEVKILETEKNHVVYRG 370
           +L+ +M  P +L++V I ET KN   Y+G
Sbjct: 111 KLKSVMSNPSVLYKVTIEETPKNIFTYKG 139


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 685 KF*SVIIRSSHKVHSQFSHFNNLKYFRNIIYV 590
           +F S ++ S H++ S + H NN KY+ N+I++
Sbjct: 119 QFVSAVVLSVHRITSVYLHMNNDKYW-NLIFI 149


>Z66516-4|CAA91359.2|  500|Caenorhabditis elegans Hypothetical
           protein W03C9.6 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
 Frame = -3

Query: 315 NCGFSIIL*SWSQTYIATFSVVLAIVLKYGTSLSKFLWSSGSRMAVFMYFLRSVIFITIP 136
           N  + I++  W Q   AT SVV    L     ++ + WS    +      L +V  + + 
Sbjct: 275 NLNWRIVVLCWIQKMNATLSVVTLTTLTSVIFMTNYGWSGAKTVLAMSITLGAVGILAVI 334

Query: 135 V*G-----STGPFTVTRNKIIIQYVFFIS 64
           V G     + G F   R   +I  V F+S
Sbjct: 335 VAGLYFFCNLGNFLQQRIAFLIGLVIFMS 363


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 173 IKTAILEPLDHKNLDNDVPYFK 238
           +KT +  P++ K LDN  P+FK
Sbjct: 492 VKTPLEAPIEDKKLDNKKPFFK 513


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 31/109 (28%), Positives = 49/109 (44%)
 Frame = -2

Query: 652 KVHSQFSHFNNLKYFRNIIYVIIMF*FYSYKN*LL*SVLLKECIHHLTIVI*NIFHYKNI 473
           + H +   ++ +     II VI  F   S  N L  S+ + EC++ LT +  N  H  + 
Sbjct: 517 QAHERNEEYDLIGCMMKIIEVIETFPSTSANN-LRYSIYM-ECVNCLTEISGNKSHQFHS 574

Query: 472 QDSRILLVRI*GNFMRNMTSVTRGVRLFPRVCITTTVHNMIFFSF*DLN 326
            D  ++L  I  N++  MTSV       P + + T + NMI      LN
Sbjct: 575 LDVSLVL-DIFLNYIDKMTSVDSFFGEHPCIPVWTAILNMIDLDLPGLN 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,674,738
Number of Sequences: 27780
Number of extensions: 331496
Number of successful extensions: 772
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)