Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e06
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    31   0.16 
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    29   0.88 
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    29   0.88 
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    28   1.5  
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha...    27   2.0  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   4.7  
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    26   4.7  
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    26   6.2  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   8.2  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   8.2  
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.2  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   8.2  

>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 366 DYIIVGAGSAGCVLASRL-TEDPKVTVLLLEVGKPEMLLTDV 488
           D II+GAG  GC L + L  +  KV VL  ++ +P+ ++ ++
Sbjct: 7   DIIIIGAGITGCALGAALGRQGRKVLVLERDMSEPDRIVGEL 48


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 360 EYDYIIVGAGSAGCVLASRLTEDPK 434
           EYD I++G G   CVL+  L+ D K
Sbjct: 4   EYDVIVLGTGLTECVLSGLLSVDGK 28


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 156 AKNSGHVKNRETKNNGNRRSSRSLPQHSVVNLLMQSLSPDYVPSNPS 296
           +K   H+   +  N G+ ++ R++   SV   L  S  PD +  +PS
Sbjct: 249 SKRLSHMVKDQQNNEGSSQNLRNITVESVRGFLRDSSKPDNIMDSPS 295


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 285 WARNLAIRIASINLRPNAEAATAKIFCFHCSLFP 184
           WA+   + IA+I +      A  K+FCF   +FP
Sbjct: 26  WAKRSGLAIAAICILGILILAIVKLFCFKAIIFP 59


>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 360 EYDYIIVGAGSAGCVLASRL-TEDPKVTVLLLE 455
           E D +IVGAGSAG   A  + T  P + + ++E
Sbjct: 76  ESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIE 108


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 588 STVYLSFLNRPPAAAPYSKAMHNPYSESMAPQT 490
           S++ L  +++P  +AP + A   PYS    P T
Sbjct: 15  SSIPLRQMSQPTTSAPSNSASSTPYSPQQVPLT 47


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 348 APLPE-YDYIIVGAGSAGCVLASRLTEDPKVTVLLLEVGK 464
           AP+ + +DY+++G GS G   A R  +      L+   G+
Sbjct: 2   APISKVFDYLVIGGGSGGLASARRAAKHGAKVALIEASGR 41


>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 348 APLPEYDYIIVGAGSAGCVLASRLTEDPKVTVLLLEVGKPEMLLTD 485
           +PL E   +I GAG+AG  +A+++        L L+  +  + + D
Sbjct: 293 SPLTEQRIMIFGAGTAGVGIANQIVAGMVTDGLSLDKARGNLFMID 338


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 157 LKTVATLKIGKQRTMETEDLRGRCL 231
           L+T+A+++I +Q+  E +D   +CL
Sbjct: 165 LQTLASMRISQQKIEEAKDALSKCL 189


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/55 (34%), Positives = 22/55 (40%)
 Frame = +3

Query: 108 IIFMWFLLFVNANCCDAKNSGHVKNRETKNNGNRRSSRSLPQHSVVNLLMQSLSP 272
           +IF+ F  F    CC       V    T  N      R L QH +VN    SLSP
Sbjct: 34  VIFINFFFFYLCRCC-------VYFYHTLENQEGDDERPLIQHHMVNRSTGSLSP 81


>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 217 EDLLFPLFFVSRFLTWPLF 161
           ED LFPLFF S F+   LF
Sbjct: 415 EDRLFPLFFGSFFIPIALF 433


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 97  HVAKLYLCGFFSLS--TPIVATLKTVATLKIGKQRTMETEDLRGRCLS 234
           +V  L LC F + S  + ++ATL+T+A L +  +     +DL+   ++
Sbjct: 383 NVFYLALCEFLNSSDYSILIATLRTLARLALNDRNNRLLQDLKSNVIA 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,160,243
Number of Sequences: 5004
Number of extensions: 70050
Number of successful extensions: 257
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 257
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)