Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e06
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    94   8e-20
AC006768-1|AAF60576.2|  433|Caenorhabditis elegans Hypothetical ...    38   0.007
Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF005246-1|AAB95119.1|  556|Caenorhabditis elegans voltage-depen...    29   3.3  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    28   5.8  
Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 94.3 bits (224), Expect = 8e-20
 Identities = 54/117 (46%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
 Frame = +3

Query: 369 YIIVGAGSAGCVLASRLTEDPKVTVLLLEVGKPEMLLT---DVPSVAPYFQNTD-YAWPY 536
           +IIVGAGSAGCVLA+RLTEDP   VLL+E G  +        +P+   Y   +D Y W Y
Sbjct: 40  HIIVGAGSAGCVLANRLTEDPSNRVLLIEAGPVDHKWDWRIHMPAALMYNLCSDTYNWHY 99

Query: 537 YMEPQPGVCLGMINKRCYWPRGRAIGGTSVINYMIYTRGRPEEWDRIEAAGNYGWSY 707
           +   Q    LG  N+  YWPRGR  GG+S +N M Y RG   +++R E  G  GW+Y
Sbjct: 100 HTTAQKN--LG--NRVFYWPRGRVWGGSSTLNAMCYVRGHAYDYNRWEKEGASGWNY 152


>AC006768-1|AAF60576.2|  433|Caenorhabditis elegans Hypothetical
           protein Y45G12B.3 protein.
          Length = 433

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 333 PKGLNAPLPEYDYIIVGAGSAGCVLASR-LTEDPKVTVLLLEVGK 464
           P   +  LP+YD +IVG G  GC  A + L E P++ V L+E  K
Sbjct: 16  PPKKSVDLPKYDLVIVGGGIVGCATARQLLIEKPQLKVALIEKEK 60


>Z81449-1|CAB03763.1|  473|Caenorhabditis elegans Hypothetical
           protein C46F11.2a protein.
          Length = 473

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/43 (30%), Positives = 28/43 (65%)
 Frame = +3

Query: 336 KGLNAPLPEYDYIIVGAGSAGCVLASRLTEDPKVTVLLLEVGK 464
           + + + + E+DY+++G GS G + ++R   +  V+V L+E G+
Sbjct: 12  RSIMSGVKEFDYLVIGGGSGG-IASARRAREFGVSVGLIESGR 53


>Z81449-2|CAD88214.1|  459|Caenorhabditis elegans Hypothetical
           protein C46F11.2b protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/35 (37%), Positives = 24/35 (68%)
 Frame = +3

Query: 360 EYDYIIVGAGSAGCVLASRLTEDPKVTVLLLEVGK 464
           E+DY+++G GS G + ++R   +  V+V L+E G+
Sbjct: 6   EFDYLVIGGGSGG-IASARRAREFGVSVGLIESGR 39


>Z72512-3|CAA96665.2|  310|Caenorhabditis elegans Hypothetical
           protein R07B5.5 protein.
          Length = 310

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 37  VFCCAFLRTERKNI*IQRCTHVAKLYLCGFFSLSTPIVATLKTVAT 174
           V+CCAF     KNI IQ+      +     FS+S+ + A+L  + +
Sbjct: 189 VYCCAFKNKTEKNIMIQKAILNTVIVGAAVFSISSVLSASLIAITS 234


>Z68010-3|CAA92011.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 129 LFVNANCCDAKNSGHVKNRETKNNGNRRSSRS 224
           + ++ NCCD +N  H K+RE   N +  ++ S
Sbjct: 504 ILIDQNCCDEENHNH-KHREKSENSDEGTNSS 534


>Z67756-4|CAA91765.1|  558|Caenorhabditis elegans Hypothetical
           protein R07A4.1 protein.
          Length = 558

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 129 LFVNANCCDAKNSGHVKNRETKNNGNRRSSRS 224
           + ++ NCCD +N  H K+RE   N +  ++ S
Sbjct: 504 ILIDQNCCDEENHNH-KHREKSENSDEGTNSS 534


>AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical
           protein B0019.1 protein.
          Length = 724

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 363 YDYIIVGAGSAGCVLASRLTED-PKVTVLLLE 455
           YD I+VGAG  G   A  + ++ P ++VL+LE
Sbjct: 46  YDVIVVGAGLTGLTAARNIQQNRPGLSVLVLE 77


>AF005246-1|AAB95119.1|  556|Caenorhabditis elegans
           voltage-dependent potassium channelalpha subunit
           protein.
          Length = 556

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 129 LFVNANCCDAKNSGHVKNRETKNNGNRRSSRS 224
           + ++ NCCD +N  H K+RE   N +  ++ S
Sbjct: 502 ILIDQNCCDEENHNH-KDREKSENSDEGTNSS 532


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -2

Query: 482 CQQHFRLPYFQKKHCHFRVLGQSRCENTSS 393
           C   FR+    KK CHF      +C N S+
Sbjct: 34  CAAFFRIVSISKKKCHFSPRPTHKCRNNSN 63


>Z68119-6|CAE17916.1|  181|Caenorhabditis elegans Hypothetical
           protein T18D3.9 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = -3

Query: 289 LLGT*SGDKDCINKFTTEC*GSDREDLLFPLFFVSRFLTWPLFLASQQLALTKRRNHINI 110
           + GT SG  DC+ ++ +     DR       F  S F+   LF+  + L   K  N   +
Sbjct: 22  IAGTISGSGDCLAQYLSHNQEWDRWRTARFSFLSSCFMAPSLFIWFRLLEKVKGNNKSLL 81

Query: 109 ILRRVCI 89
           +++++CI
Sbjct: 82  LVKKLCI 88


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 481 VNNISGFPTSRRSTVTFGSSVNLDARTHP-AEP 386
           VNN S FP+S  ST   G+S  + A   P  EP
Sbjct: 749 VNNSSTFPSSGNSTPNIGASSTVSAMLQPKTEP 781


>Z29095-1|CAA82353.2| 2045|Caenorhabditis elegans Hypothetical
           protein R10E11.1a protein.
          Length = 2045

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 481 VNNISGFPTSRRSTVTFGSSVNLDARTHP-AEP 386
           VNN S FP+S  ST   G+S  + A   P  EP
Sbjct: 738 VNNSSTFPSSGNSTPNIGASSTVSAMLQPKTEP 770


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,905,745
Number of Sequences: 27780
Number of extensions: 413870
Number of successful extensions: 1256
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)