Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e06
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    96   3e-22
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   2.9  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   2.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   6.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.7  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 96.3 bits (229), Expect = 3e-22
 Identities = 46/118 (38%), Positives = 67/118 (56%)
 Frame = +3

Query: 363 YDYIIVGAGSAGCVLASRLTEDPKVTVLLLEVGKPEMLLTDVPSVAPYFQNTDYAWPYYM 542
           YD+I+VG G+A  V+A RL+E     VLLLE G  E    ++PS    +   D  W YY 
Sbjct: 69  YDFIVVGGGAARAVVAGRLSEVSNWKVLLLEAGPDEPAGAEIPSNLQLYLGGDLDWKYYT 128

Query: 543 EPQPGVCLGMINKRCYWPRGRAIGGTSVINYMIYTRGRPEEWDRIEAAGNYGWSYKDV 716
             +   CL      CYWPRG+ +GGT++ + M Y RG  ++++R    G +GWS+ +V
Sbjct: 129 TNESHACLS-TGGSCYWPRGKNLGGTTLHHGMAYHRGHRKDYERWVQQGAFGWSWDEV 185


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 624 VINYMIYTRGRPEEWDRIEAAGNYGWSYK 710
           V+NY+     RP++W+R+ A  +    YK
Sbjct: 86  VVNYL--KTKRPKDWERLSAKYDSTGEYK 112


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 624 VINYMIYTRGRPEEWDRIEAAGNYGWSYK 710
           V+NY+     RP++W+R+ A  +    YK
Sbjct: 86  VVNYL--KTKRPKDWERLSAKYDSTGEYK 112


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +3

Query: 366 DYIIVGAGSAGCV--LASRLTE-DPKVTVLLLE 455
           DY++ GAG+ G +  +  +L E  P + ++ ++
Sbjct: 208 DYLVAGAGTGGTISGIGRKLKELSPNIKIIAVD 240


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 381 GAGSAGCVLASRLTEDPKVTVLLLEVGKPEMLLTD 485
           G G  G  +AS L+    + V+ + +   E LLT+
Sbjct: 46  GGGGGGLGIASGLSAMLSLVVVTVAISTGEWLLTE 80


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 407 ENTSSRTCSHDDVVIFRQRC 348
           ENT +++C+  D+  ++  C
Sbjct: 185 ENTENKSCTDSDIEKYKMFC 204


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)
 Frame = +1

Query: 316 ETNTNYRRVSMHRCRNMTTSSWEQVRLDVFSHRD*PRT 429
           + NT+++    H  +   + SWE     V  H +  RT
Sbjct: 686 DPNTHFQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRT 723


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,052
Number of Sequences: 438
Number of extensions: 5276
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)