Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e04
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    29   0.58 
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    27   2.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   4.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   4.1  
SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|c...    25   7.2  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   7.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   9.5  
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos...    25   9.5  

>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 21/77 (27%), Positives = 36/77 (46%)
 Frame = +3

Query: 303 SEALQGVELEFSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNHYWYQMYIDDLPIW 482
           S A  GV   F+G+ I F+  VP   + +IE+       F+Y  K+ Y+ ++     P  
Sbjct: 495 SPAKDGVVTFFTGV-ILFQNLVPISLYISIEIVKTIQAIFIYFDKDMYYKKLKYACTPKS 553

Query: 483 GTVGEIDGDHFYIWTHK 533
             + +  G   YI++ K
Sbjct: 554 WNISDDLGQVEYIFSDK 570


>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -1

Query: 573 LQQSCFHYTQCQISCESRCKNGLHQSHLQCPILADRLYTFDTNN 442
           LQ    HY    +SC       L  + LQ  +LAD+ Y  + +N
Sbjct: 12  LQVCSTHYAMTIVSCGFHSPQSLMNADLQHCLLADQNYLLNNSN 55


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 506 SINLTYSAPYWQIVYIHLIPIMVFDSINESFVSLIVEFDGT 384
           S+ LTY  PY + +Y +    + F   NE F   +   DG+
Sbjct: 261 SVYLTYDVPYGRSLYYYTSCALEFRFTNEFFPMDVTPNDGS 301


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 307 KLYKASNWSSAVLILRLRKMCRRSNFVPSNSTIKLTK 417
           +L   S+W+  + ++ L + C+RS +  S+  ++ TK
Sbjct: 56  QLVGGSSWTGKIPVVLLNEHCQRSKWEKSDVKVRQTK 92


>SPAC1687.02 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
 Frame = +3

Query: 48  FILIVN*TVVATLLRVKMKFLYILFIMWTIVHCDEHTHSYKDGEQVVLWMNTV------G 209
           F+L      +A  L+  ++F Y     W   H    THS      V  + N++      G
Sbjct: 167 FLLAYPNAYIAAALQTVVQFSYTTVFGWYTTHLFLSTHSLFPSFLVHAFCNSMGLPTLYG 226

Query: 210 PYHNRQETYAYFSL 251
              NR +T  Y++L
Sbjct: 227 KIGNRNQTRIYYTL 240


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 563 PVSIIPNVKFLVSPDVKMVSINLTYSAPYWQIVYIHLIPIMVF 435
           P   I  ++FL +PD +     L Y+     I+Y+   P  VF
Sbjct: 539 PAGTIAIIEFLNAPDCRQAFSKLAYTRIKSSILYLEKAPRDVF 581


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -1

Query: 561 CFHYTQCQISCESRC 517
           CFH   C ISC SRC
Sbjct: 725 CFH---CSISCHSRC 736


>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 333 FSGLDITFKENVPAQQFCAIELNDQTYKAFVYAVKNH 443
           FSG  +TFK N+P      +  N+ T    VY+ + H
Sbjct: 192 FSG-KLTFKANIPVPTSEVVTENNVTRNVTVYSNQKH 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,710
Number of Sequences: 5004
Number of extensions: 62833
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)