Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25e04
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.36 
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    25   0.84 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   4.5  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +3

Query: 252 PFCVGTKV-TIGHYHETLSEALQGVELEFSGLDITFKE 362
           P  + T+V ++  +HE L+EAL G  + F+  +I+ KE
Sbjct: 282 PAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKE 319


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 YHETLSEALQGVELEFSGLDITFKE 362
           +HE L+EAL G  + F+  +I+ KE
Sbjct: 6   HHEALTEALPGDNVGFNVKNISVKE 30


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 21  LGVLVIRVMFILIVN*TVVATLLRVKM--KFLYILFIMWTI 137
           + +L+  V+F+L+V+  +  T L + +  K+L   FIM T+
Sbjct: 269 ISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTV 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,291
Number of Sequences: 438
Number of extensions: 4430
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)