Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d22
         (525 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0970 - 9778183-9778488,9780052-9780567                           29   3.0  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    28   4.0  
04_04_0426 + 25125590-25125670,25126171-25126256,25126423-251264...    28   4.0  
04_04_0117 - 22885359-22887065                                         27   9.2  
01_01_0573 + 4253484-4254653,4255526-4255735,4255842-4255937,425...    27   9.2  

>08_01_0970 - 9778183-9778488,9780052-9780567
          Length = 273

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 237 GNTTSYWFSLIYISSAFAAYIYVLYSM 157
           GN  S W  + ++++AF A + V+YS+
Sbjct: 229 GNLRSSWKKIAFVNAAFVALLLVVYSL 255


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 94  GTNTTYLSGSSFD-YKCRNCQKHTIQHIDICGKRRADINQRKPIGCGVP 237
           GT     +G+ F+ +KC +CQ   ++    CGK      QR    C +P
Sbjct: 62  GTGRNKKNGNIFERWKCFDCQGFGLKSCPSCGKEGLTPEQRGETRCILP 110


>04_04_0426 +
           25125590-25125670,25126171-25126256,25126423-25126471,
           25126547-25126675,25126973-25127055,25127791-25127959,
           25128038-25128103
          Length = 220

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 12  FHKISVTV*FYIYISLIFYNEFNHER 89
           F+ + V+V FY+Y +++F+N   H R
Sbjct: 64  FNDLVVSVYFYLYNNIVFFNLMTHAR 89


>04_04_0117 - 22885359-22887065
          Length = 568

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -2

Query: 290 ESILASSFVGGEIDTKDTGTPHPIGF 213
           E   A  FV G    K TGTPH +GF
Sbjct: 541 EQFTAGPFVDGGTWLKFTGTPHFLGF 566


>01_01_0573 +
           4253484-4254653,4255526-4255735,4255842-4255937,
           4256034-4256255,4256829-4257023,4257097-4257243,
           4257323-4257472,4257762-4257892,4257978-4258194
          Length = 845

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 315 KVYDYHEDFLSLPGKRYFVEKMQKEE 392
           K+YD + DF++   K  F+ K+Q+ E
Sbjct: 631 KLYDKYNDFVTAEDKEAFIAKLQEVE 656


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,991
Number of Sequences: 37544
Number of extensions: 186840
Number of successful extensions: 412
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)