Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d11
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852...    29   3.4  
04_04_0584 + 26381220-26381232,26381583-26381594,26381921-263820...    28   6.0  
04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278     28   6.0  
01_07_0167 - 41613834-41613842,41614060-41615056,41615456-416163...    28   6.0  
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551...    28   7.9  
01_06_0850 + 32444475-32444722,32445159-32445312,32445763-324461...    28   7.9  

>07_03_1116 -
           24084162-24084201,24084481-24084570,24084640-24085220,
           24085653-24085822,24086006-24087074
          Length = 649

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 104 CTTSMSKAMNKFLNENWKKLSEELQVPMEEALR 202
           C    +  + KFL+ENWKKLS  L+  +  ALR
Sbjct: 182 CEQMDTAGLLKFLSENWKKLS-SLRDELSAALR 213


>04_04_0584 +
           26381220-26381232,26381583-26381594,26381921-26382028,
           26382137-26382217,26382320-26382465,26382550-26382624,
           26382709-26382756,26382845-26382994,26383081-26383140,
           26383394-26384274,26384674-26385670,26385887-26385895
          Length = 859

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 116 MSKAMNKFLNENWKKLSEELQVPMEEALRD 205
           MSK  +K++ E W+K   +L V M+ A  D
Sbjct: 727 MSKIPDKYIIERWRKKERKLTVSMQLATND 756


>04_03_0363 - 14942195-14942203,14942421-14943417,14944178-14944278
          Length = 368

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 116 MSKAMNKFLNENWKKLSEELQVPMEEALRD 205
           MSK  +K++ E W+K   +L V M+ A  D
Sbjct: 236 MSKIPDKYIIERWRKKERKLTVSMQLATND 265


>01_07_0167 -
           41613834-41613842,41614060-41615056,41615456-41616336,
           41616437-41616508,41616590-41616649,41616736-41616885,
           41616974-41617021,41617107-41617181,41617266-41617411,
           41617514-41617594,41617703-41617810,41618046-41618057,
           41618137-41618148,41618499-41618546,41619021-41619105
          Length = 927

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 116 MSKAMNKFLNENWKKLSEELQVPMEEALRD 205
           MSK  +K++ E W+K   +L V M+ A  D
Sbjct: 795 MSKIPDKYIIERWRKKERKLTVSMQLATND 824


>06_01_0741 -
           5510159-5510581,5510862-5511124,5511223-5511400,
           5511411-5511698,5511801-5511899,5511973-5512440,
           5512559-5512744,5512887-5513004,5513035-5513228
          Length = 738

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 609 LSYSNKIIE*LVMHRLSDPTNPHSVIL 529
           LS SN++   + MHR +DP  P+ V+L
Sbjct: 545 LSGSNEVSVRVTMHRSTDPGQPNGVVL 571


>01_06_0850 +
           32444475-32444722,32445159-32445312,32445763-32446160,
           32446476-32446571,32446650-32446722,32446854-32447136,
           32447225-32447556,32447642-32447912,32448502-32448783,
           32449106-32449518
          Length = 849

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 319 YMNLFPTYSLVAYGTIPATDGESLLTLTLEPAESTTGSESRPTE 450
           Y+ L    ++   G  P TDG+S+ TL   P  +   + + PTE
Sbjct: 402 YVVLGNNLTITGVGLAPGTDGDSMFTLVAAP-HALKNNVASPTE 444


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,308,159
Number of Sequences: 37544
Number of extensions: 249318
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)