Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d11
         (680 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    29   0.041
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.29 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   6.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   8.2  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 29.1 bits (62), Expect = 0.041
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 116 MSKAMNKFLNENWKKLSEELQVPMEEALRDFLKPLADHAFATLNADDI 259
           + + MN+F+NEN + L +ELQ   EE        + +  F  +  D I
Sbjct: 202 LGEQMNRFINENSELLFKELQAAYEETFSLVFTKIDNEIFNRVPFDKI 249


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 352 AYGTIPATDGESLLTLTLEPAESTTGSESRPTEKIRRENQ 471
           A GT PAT    + T     A  TTG+ + PT ++R+  Q
Sbjct: 233 ATGTGPATPSAVVATSNATAA-MTTGTTTIPTRRLRKRRQ 271


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 532  NHRVGIRGIRQSMHH*SFDDFIG 600
            ++R  +RG+  +  H S +DF+G
Sbjct: 1589 DYRYSVRGLCGNFDHDSTNDFVG 1611


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 524 YLKITEWGFVGSDNLCITSHSMILLEYDNNCE 619
           Y  +T  G  G     IT +++   +Y NNCE
Sbjct: 199 YNALTCEGCKGFFRRSITKNAVYQCKYGNNCE 230


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +2

Query: 8   LLLITYTIFVVFKVFFLRCSLCIQSSLKLYSRCTTSMSKA 127
           LLL+ Y +F    +    C +   S+  +Y      +SKA
Sbjct: 136 LLLMLYLLFATLPLRLSFCVVLACSTATVYVMSVVGLSKA 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,377
Number of Sequences: 438
Number of extensions: 3289
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)