Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d09
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0834 - 21626491-21626508,21626720-21626843,21626927-216270...    98   3e-21
03_05_1069 + 30118930-30120120                                         29   1.8  
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989...    28   4.2  
01_01_0101 - 766382-767487,767599-767756,767900-768615                 28   4.2  
01_06_1306 + 36151907-36154369                                         27   5.5  
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971...    27   9.6  

>08_02_0834 -
           21626491-21626508,21626720-21626843,21626927-21627012,
           21627869-21627874
          Length = 77

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 40/69 (57%), Positives = 55/69 (79%)
 Frame = +1

Query: 121 ERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKA 300
           +R+NI+SQLEHLQ+KY+GTGHAD  ++EW +N  RDS  SY+GH  +L+YF+I ENES  
Sbjct: 5   DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAENESIG 64

Query: 301 RVKFNLMER 327
           R ++N M+R
Sbjct: 65  RERYNFMQR 73


>03_05_1069 + 30118930-30120120
          Length = 396

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 175 TGHADTTKYEWLMNQHRDSCCSYM-GHPDLLSYFAIVE-NESKARVKFNLME 324
           +G AD T Y W  +    SC S + GH + +   AIVE N+  A V  + ++
Sbjct: 281 SGSADNTIYVWRRDGGVHSCLSVLTGHTEPIRCLAIVEDNKDNAAVPVDAVD 332


>09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,
            9893330-9893557,9894095-9894261,9894312-9894395,
            9894614-9894820,9894919-9895251,9895371-9895513,
            9895607-9895723,9895824-9895980,9896054-9896157,
            9896272-9896432,9896518-9896707,9896732-9896834,
            9896950-9897231,9897327-9897649,9897750-9897786,
            9898109-9898162,9898292-9898368,9898449-9898502,
            9898738-9898822,9900289-9900426,9900592-9900603
          Length = 1150

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 24/113 (21%), Positives = 48/113 (42%)
 Frame = -2

Query: 459  FFFRIYVMIRDSKSNNK*ISLILFLKSKRLIFRLFWRWAAWLKHSFHQIEFYARFRFIFY 280
            +FF I V   +++ N   +  I   K K L   ++WRW  W+      I      +F   
Sbjct: 1037 WFFGIIVFTHEARYNVSRLCSIS-TKLKPLRIPIWWRWYYWICPVAWTINGLVTSQFGDV 1095

Query: 279  DRKVTQQIRMTHVTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSF 121
            D K    +R++    +     +   ++     V+ A +FA+ +F  ++ + +F
Sbjct: 1096 DDKFDNGVRVSDFVESYFGYNLDLLWVAAMAVVSFAILFAI-LFGFSLKLFNF 1147


>01_01_0101 - 766382-767487,767599-767756,767900-768615
          Length = 659

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 282 YDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVGVAC 175
           YDR + QQ+ +  ++AA VA +       C +G+ C
Sbjct: 564 YDRLIEQQVGVGEISAATVANMHELERKLCIIGLHC 599


>01_06_1306 + 36151907-36154369
          Length = 820

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 277 SQSNSTNPDDPCNCSKSRD 221
           S +NS N   PCNCS S D
Sbjct: 166 SAANSCNSLSPCNCSSSSD 184


>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
            17097266-17097494,17097857-17097981
          Length = 1814

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +1

Query: 199  YEWLMNQHRDSCCSYMGHPDLLSYFA-IVENESKARVKFNLMERMLQPCGPPPEKPED 369
            Y  LMNQ+         + D   +F+      + A   F++++  ++P  PPPEK E+
Sbjct: 1617 YRKLMNQNSKVGKEATSNSDCPQFFSPSFSLLTFALESFSVVDEEVKPISPPPEKEEE 1674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,202,588
Number of Sequences: 37544
Number of extensions: 184317
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)