Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25d06
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 48 1e-06
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 28 1.2
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 28 1.5
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 2.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 4.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 4.7
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom... 26 4.7
SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces p... 26 4.7
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 6.2
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 26 6.2
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 8.2
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 48.4 bits (110), Expect = 1e-06
Identities = 33/87 (37%), Positives = 43/87 (49%)
Frame = +1
Query: 430 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPETRD 609
D S+I TYR G G E +TSD GWGCM+R Q +L L + PE +
Sbjct: 47 DSFSLITITYRSGIE--GLENMTSDTGWGCMIRSTQTLLANCL--------RICYPEKQ- 95
Query: 610 PTYLKIIQRFEERKQAPYSIHQVALMG 690
+I+ F + AP+SIHQ MG
Sbjct: 96 --LKEILALFADEPSAPFSIHQFVTMG 120
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 28.3 bits (60), Expect = 1.2
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = -1
Query: 206 HIPFHSVNKN*LILCKNTI*LH--------TTATITMH-----INCTKCNMGIY*NNKIY 66
HIP HS+ KN N + +H +A I++ + T C+ G Y + KI
Sbjct: 757 HIPIHSITKNQRTRLLNLLIIHEKLLSDKDNSAHISLRKIIYTLMKTPCSSGFYRDPKII 816
Query: 65 LD----KKHDMNWNKIHI 24
+D K D++++K+H+
Sbjct: 817 IDLMQFGKTDLSFHKVHV 834
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = -1
Query: 611 GSLVSGDHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVKPSSP 480
GSL S + + + A P T+ RN P+P + +P+ P
Sbjct: 325 GSLHSKSPSPAFTANRFSPAAPTTVSSERNAPPYPSAPTRPTPP 368
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -2
Query: 571 SVL*QEQHLIPSVHIVTYSPILYQKSNLHHQLVQ 470
+VL ++ +P + +T SP +K NL+H+L Q
Sbjct: 169 AVLSKKHFTLPRIFGMTASPFTGKKGNLYHRLYQ 202
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 421 IRRDITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVL 546
IR +TSI + RK FV DE L + + GC++ +L
Sbjct: 1317 IRNRLTSIRFIVNRKFFVCFKDETLPNVEIEGCLIEKSNAIL 1358
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 118 CIVIVAVVCNYIVFLHKI 171
C+ + VCN++ FLH+I
Sbjct: 473 CVARLRSVCNFVAFLHQI 490
>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 594
Score = 26.2 bits (55), Expect = 4.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 118 CIVIVAVVCNYIVFLHKIN 174
CI + CN ++FLH++N
Sbjct: 451 CIEVYLSYCNTLIFLHRLN 469
>SPAC1556.07 |pmm1||phosphomannomutase Pmm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 257
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +2
Query: 161 YTKLTNFCLHY 193
Y KL NFCLHY
Sbjct: 106 YQKLVNFCLHY 116
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 366 NVEKCSIEGQKGVQCC*RGCP 304
NV+ CS G +G+ C GCP
Sbjct: 116 NVDYCSACGGRGLFICCEGCP 136
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 559 QEQHLIPSVHIVTYSPILYQKSN 491
Q+QH IP ++ YSP+L S+
Sbjct: 340 QQQHRIPKLNASNYSPLLSPSSH 362
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 8.2
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = -1
Query: 314 EDVQEKSNFINVIFNLIKKYILLQTDIKIL*KSASFH 204
++ E+S +++ L+KK + + DIK+L SA+ +
Sbjct: 612 DEAHERSLNTDILMGLLKKVLSRRRDIKLLVTSATMN 648
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,164,078
Number of Sequences: 5004
Number of extensions: 69111
Number of successful extensions: 180
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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