Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d06
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958...    73   2e-13
04_04_1624 - 34849385-34849410,34849748-34851052,34852121-348522...    71   9e-13
06_02_0263 - 13566621-13569875                                         29   2.8  
09_04_0363 + 16957949-16958361,16958524-16958527                       29   4.9  

>03_03_0216 +
           15495395-15495566,15495648-15495733,15495824-15495874,
           15496005-15496390,15496760-15496898,15497540-15497595,
           15497712-15497782,15497876-15498081
          Length = 388

 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = +1

Query: 430 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDW-VWSPETR 606
           D +S IW TYRKGF  I D   TSD  WGCM+R  QM++  AL+  HL   W   S +  
Sbjct: 46  DFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRKPSQKPY 105

Query: 607 DPTYLKIIQRFEERKQAPYSIHQVALMG 690
            P Y+ I+  F + +   +SIH +   G
Sbjct: 106 SPEYIGILHMFGDSEACAFSIHNLLQAG 133


>04_04_1624 -
           34849385-34849410,34849748-34851052,34852121-34852294,
           34852386-34852456,34852563-34852618,34853047-34853185,
           34853310-34853695,34853801-34853851,34853936-34854021,
           34854112-34854553,34856241-34856315,34856457-34856593,
           34856679-34856838,34856917-34857012,34857093-34857247,
           34857900-34858032
          Length = 1163

 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
 Frame = +1

Query: 430 DITSIIWCTYRKGFVPIGDEGLTSDKGWGCMLRCGQMVLGVALVRVHLSVDWVWSPE-TR 606
           D +S IW TYR+GF  I D   TSD  WGCM+R  QM++  AL+  HL   W    E   
Sbjct: 388 DFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHLGRSWRRPLEKPY 447

Query: 607 DPTYLKIIQRFEERKQAPYSIHQVALMG 690
           +P Y+ I+  F + +   +SIH +   G
Sbjct: 448 NPEYIGILHMFGDSEACAFSIHNLLQAG 475


>06_02_0263 - 13566621-13569875
          Length = 1084

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/35 (31%), Positives = 25/35 (71%)
 Frame = -1

Query: 314 EDVQEKSNFINVIFNLIKKYILLQTDIKIL*KSAS 210
           ++  E++ + +++F L+KK I  +TD+K++  SA+
Sbjct: 551 DEAHERTIYTDILFALLKKLIRRRTDLKLIVTSAT 585


>09_04_0363 + 16957949-16958361,16958524-16958527
          Length = 138

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 593 DHTQSTDKCTLTRATPNTICPHRNIQPHPLSEVK 492
           DH ++T   T T +TPN I P       P S +K
Sbjct: 85  DHLKATSPATATASTPNIIVPMTPAATAPTSSLK 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,546,835
Number of Sequences: 37544
Number of extensions: 373704
Number of successful extensions: 800
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)