Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d06
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.9  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 282 INKITFFLDILVSNIAL-PFVLQYYIFPHLIRLNKIKQKINVHRFGSY 422
           + K T+   + +  + L  F +  Y+  HL+        + VH FG+Y
Sbjct: 135 LGKTTYMQLVFMGIVELIMFTVNKYVGEHLLMTVDAGDSMFVHTFGAY 182


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +3

Query: 303 LDILVSNIALPFVLQYYIFPH-LIRLNKI-KQKINVHRF 413
           +  L++ I  PF++ +   PH  +R N + KQ ++ H +
Sbjct: 161 IGFLLAGIVQPFLIHWIWTPHGWMRRNVLNKQHVHFHDY 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,320
Number of Sequences: 438
Number of extensions: 5131
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)