Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d05
         (636 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...   237   5e-63
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...   237   5e-63
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    92   3e-19
Z83116-11|CAM84819.1|  278|Caenorhabditis elegans Hypothetical p...    31   0.52 
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    30   1.2  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    30   1.2  
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z29094-14|CAJ43434.1|  893|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z29094-10|CAD45580.2|  965|Caenorhabditis elegans Hypothetical p...    28   4.9  
Z29094-9|CAA82347.3|  960|Caenorhabditis elegans Hypothetical pr...    28   4.9  
U64844-9|AAB18309.1|  330|Caenorhabditis elegans Serpentine rece...    28   4.9  
AY450852-1|AAR18092.1|  960|Caenorhabditis elegans Tousled-like ...    28   4.9  
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.     27   8.5  
AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.    27   8.5  
AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.    27   8.5  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score =  237 bits (580), Expect = 5e-63
 Identities = 107/181 (59%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +1

Query: 97  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 276
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 277 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 453
            + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPD
Sbjct: 72  RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131

Query: 454 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 633
           ICGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G 
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190

Query: 634 L 636
           L
Sbjct: 191 L 191


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score =  237 bits (580), Expect = 5e-63
 Identities = 107/181 (59%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
 Frame = +1

Query: 97  INCDVFFEEKFPDDSWESNWVYSEHPGKEFGKFKLTAGKFFSDPEDDKGLKTSEDARFYA 276
           ++ +V+F+E+F D SWE  WV S+H   +FG FKL+AGKFF     D+G++TS+DA+FY+
Sbjct: 13  VSAEVYFKEEFNDASWEKRWVQSKHKD-DFGAFKLSAGKFFDVESRDQGIQTSQDAKFYS 71

Query: 277 LSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGPD 453
            + KF K FSN+GK LV+Q+TVKHEQ IDCGGGY+KV     +  D HGETPY +MFGPD
Sbjct: 72  RAAKFDKDFSNKGKTLVIQYTVKHEQGIDCGGGYVKVMRADADLGDFHGETPYNVMFGPD 131

Query: 454 ICGPGTKKVHVIFSYKGKNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESGD 633
           ICGP T++VHVI +YKG+N LIKK+I CK D  THLYTLI+  DNTYEV ID E  ++G 
Sbjct: 132 ICGP-TRRVHVILNYKGENKLIKKEITCKSDELTHLYTLILNSDNTYEVKIDGESAQTGS 190

Query: 634 L 636
           L
Sbjct: 191 L 191


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 91.9 bits (218), Expect = 3e-19
 Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 13/149 (8%)
 Frame = +1

Query: 229 EDDKGLKTSEDARFYALSRKFK-PFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFD--CKL 399
           E D GL     AR +A++ K   PF+ +    VVQ+ +K E+  +CGGGYLK+     + 
Sbjct: 107 EGDLGLIVKTKARHHAIAAKLNTPFAFDANTFVVQYDIKFEEGQECGGGYLKLLSEGAEK 166

Query: 400 EQKDMHGETPYEIMFGPDICGPGTKKVHVIFSYKGKNHLIKKDIRCK----------DDV 549
           +  +   +T Y IMFGPD CG  T KVH+IF YK   +    +              DD 
Sbjct: 167 DLANFQDKTAYTIMFGPDKCG-ATGKVHLIFRYKNPINGTISEYHANQPTTIGSTYWDDH 225

Query: 550 YTHLYTLIVKPDNTYEVLIDNEKVESGDL 636
            THL+TL+VKP   Y V +D + +  G++
Sbjct: 226 NTHLFTLVVKPTGEYSVSVDGKSLYYGNM 254


>Z83116-11|CAM84819.1|  278|Caenorhabditis elegans Hypothetical
           protein M01B2.12 protein.
          Length = 278

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -1

Query: 516 EVVLTLVTEDYVYLLGSWTTDVRAEHNLIWSLSVHVLLLQFAVKDLEVSASTVNVLF 346
           E+ + +V+ D+  LL  W+ +VRAE      L ++   L F  +D + S   +  L+
Sbjct: 36  EIRIQMVSADFGILLAEWSKEVRAEFTSAELLELYKKCLNFVKEDNKPSMVEITQLY 92


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 505   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 627
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 505   KNHLIKKDIRCKDDVYTHLYTLIVKPDNTYEV-LIDNEKVES 627
             K   I+K++ C+D   THL  L    D+TY V ++ NE+V++
Sbjct: 12856 KEKWIRKEVTCRDSFGTHLNEL--PSDHTYTVCVMTNERVDN 12895


>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
           protein T23H2.3 protein.
          Length = 1009

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -1

Query: 405 LLQFAVKDLEVSASTVNVLFMFDSELDDQGFTLITERFELTGESIEPRIFRG 250
           L + ++K+LE +      L  F S L D G  +  +  E+T E IE RI  G
Sbjct: 233 LQKLSIKELEANKDKKLKLLKFSSNLPDNGARVKLQVDEIT-EEIERRIING 283


>Z29094-14|CAJ43434.1|  893|Caenorhabditis elegans Hypothetical
           protein C07A9.3c protein.
          Length = 893

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/75 (26%), Positives = 28/75 (37%)
 Frame = -2

Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T T    
Sbjct: 254 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 313

Query: 53  FIFDSQYHLLQQKTG 9
           +  DS  +  Q   G
Sbjct: 314 YSSDSNSNSNQSPPG 328


>Z29094-10|CAD45580.2|  965|Caenorhabditis elegans Hypothetical
           protein C07A9.3b protein.
          Length = 965

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/75 (26%), Positives = 28/75 (37%)
 Frame = -2

Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T T    
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380

Query: 53  FIFDSQYHLLQQKTG 9
           +  DS  +  Q   G
Sbjct: 381 YSSDSNSNSNQSPPG 395


>Z29094-9|CAA82347.3|  960|Caenorhabditis elegans Hypothetical
           protein C07A9.3a protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/75 (26%), Positives = 28/75 (37%)
 Frame = -2

Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T T    
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380

Query: 53  FIFDSQYHLLQQKTG 9
           +  DS  +  Q   G
Sbjct: 381 YSSDSNSNSNQSPPG 395


>U64844-9|AAB18309.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein212 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 615 LIVNEDFIGVVG---FHNQSVQMCVDIIFAADIFFDEVVLTLVTEDYVYLLGSWTT 457
           LI+   ++GV     FHNQ++   + II ++  FF  +V+  +   Y      W T
Sbjct: 255 LIIPIIYVGVTSLLYFHNQAINNFIVIIVSSHGFFSTIVMICIHVPYREFTLRWLT 310


>AY450852-1|AAR18092.1|  960|Caenorhabditis elegans Tousled-like
           kinase protein.
          Length = 960

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/75 (26%), Positives = 28/75 (37%)
 Frame = -2

Query: 233 SSGSLKNFPAVNLNFPNSFPGCSLYTQLLSHESSGNFSSKNTSQFIEDNASKLTTTSTTA 54
           + GS K  PAV  N  NS+       Q+  HE   ++    T     +N    T T    
Sbjct: 321 NQGSPKRQPAVQQNGSNSYDSQQQQPQMNQHEMQNSYWGVATPSLGVNNRGTPTPTQQQH 380

Query: 53  FIFDSQYHLLQQKTG 9
           +  DS  +  Q   G
Sbjct: 381 YSSDSNSNSNQSPPG 395


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 320 WSSSSLSNMNKTLTVEADTSRSLTANWSRRTCTERLHM--RLCSALTSVVQE 469
           W SS L+  + T+  +  T RS+  + S+ TCTE  HM   +C    S  +E
Sbjct: 15  WYSSLLTIFSLTIKRKLKTIRSMQDSTSKCTCTEH-HMGGTICCCCRSDAEE 65


>AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -2

Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 245 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 302

Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
           T + S +SS N +++  S+ ++
Sbjct: 303 THVTSQQSSVNIAAERFSRILQ 324


>AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -2

Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 342 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 399

Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
           T + S +SS N +++  S+ ++
Sbjct: 400 THVTSQQSSVNIAAERFSRILQ 421


>AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -2

Query: 335 VNWTTKGLPSLLNGLNLRERA*NLASSEVFKPLSSSGSLKNFPA-VNLNFPNSFPGCSLY 159
           +++T + LPS +     R     +AS E+F+ +SSS S +N  +  ++N  +S    +  
Sbjct: 466 ISFTAQDLPSSMASPETRS-VNQMASQELFEYVSSSKSTQNHMSNEHINVDDSTSEDN-D 523

Query: 158 TQLLSHESSGNFSSKNTSQFIE 93
           T + S +SS N +++  S+ ++
Sbjct: 524 THVTSQQSSVNIAAERFSRILQ 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,336
Number of Sequences: 27780
Number of extensions: 368827
Number of successful extensions: 1243
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1224
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)