Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d03
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0099 - 1202668-1203023,1203097-1206037                           27   8.6  
09_01_0095 - 1403586-1403987,1406687-1406722,1406995-1407012,140...    27   8.6  

>10_01_0099 - 1202668-1203023,1203097-1206037
          Length = 1098

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 231  NPRHVLTSRADTRERNVTPKRGMKGN---PNVREEDDIINIL*MHGLIWSLAIARMITMT 401
            +PR +L     +R+ N+T K  +      P   EE++I++++ +       +     TM 
Sbjct: 1009 HPRDLLQHLTSSRDHNITIKEILDSRPLAPTTTEEENIVSLIKVVFSCLKASPQARPTMQ 1068

Query: 402  EQTQGIN*VNGISF*NKKCYRLL 470
            E  Q +      SF +K C R++
Sbjct: 1069 EVYQTLIDYQTSSFLSKNCSRVI 1091


>09_01_0095 -
          1403586-1403987,1406687-1406722,1406995-1407012,
          1407331-1407513
          Length = 212

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -2

Query: 87 LTSILLNFNRNFNQTKILQSFHSCGS 10
          +  ++  F+RN N+TK L SF SC S
Sbjct: 14 IAELICKFDRN-NRTKTLGSFQSCSS 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,273
Number of Sequences: 37544
Number of extensions: 173767
Number of successful extensions: 414
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)