Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25d02
(654 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein. 155 1e-37
AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens ... 155 1e-37
AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens ... 155 1e-37
AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein. 155 1e-37
AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens ... 86 9e-17
BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (D... 54 4e-07
AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subu... 54 4e-07
X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa... 49 1e-05
BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DN... 49 1e-05
D42108-1|BAA07688.1| 997|Homo sapiens Phospholipase C protein. 30 8.3
BC111985-1|AAI11986.1| 997|Homo sapiens phospholipase C-like 1 ... 30 8.3
BC101531-1|AAI01532.1| 997|Homo sapiens phospholipase C-like 1 ... 30 8.3
>BC110833-1|AAI10834.1| 952|Homo sapiens POLR1B protein protein.
Length = 952
Score = 155 bits (376), Expect = 1e-37
Identities = 78/190 (41%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +1
Query: 85 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 264
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 265 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 444
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 445 SV-TIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVT 621
S I++ LGY+PIM+KSK+C+L +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 622 RRNYPVAIKR 651
RRN+P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AK128044-1|BAC87247.1| 1135|Homo sapiens protein ( Homo sapiens
cDNA FLJ46164 fis, clone TESTI4002799, highly similar
to DNA-directed RNA polymerase I 135 kDa polypeptide (EC
2.7.7.6). ).
Length = 1135
Score = 155 bits (376), Expect = 1e-37
Identities = 78/190 (41%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +1
Query: 85 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 264
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 265 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 444
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 445 SV-TIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVT 621
S I++ LGY+PIM+KSK+C+L +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 622 RRNYPVAIKR 651
RRN+P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AK001678-1|BAA91831.1| 336|Homo sapiens protein ( Homo sapiens
cDNA FLJ10816 fis, clone NT2RP4000997, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 336
Score = 155 bits (376), Expect = 1e-37
Identities = 78/190 (41%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +1
Query: 85 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 264
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 265 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 444
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 445 SV-TIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVT 621
S I++ LGY+PIM+KSK+C+L +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 622 RRNYPVAIKR 651
RRN+P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AC012442-2|AAX81999.1| 1135|Homo sapiens unknown protein.
Length = 1135
Score = 155 bits (376), Expect = 1e-37
Identities = 78/190 (41%), Positives = 117/190 (61%), Gaps = 1/190 (0%)
Frame = +1
Query: 85 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFE 264
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ + P EF
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQAIPPFEFA 67
Query: 265 LPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQVVLPTECRQRAATYKGELKIRVTLCIDGR 444
E++ TI +A + P VP T+ K V P ECR R +TY+G+L + ++G
Sbjct: 68 FKD-ERISFTILDAVISPPTVPKGTI-CKEANVYPAECRGRRSTYRGKLTADINWAVNGI 125
Query: 445 SV-TIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVT 621
S I++ LGY+PIM+KSK+C+L +L P+ LIE +E A+E GGYF+I G E++ RML++
Sbjct: 126 SKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMP 185
Query: 622 RRNYPVAIKR 651
RRN+P+A+ R
Sbjct: 186 RRNFPIAMIR 195
>AK022533-1|BAB14082.1| 1079|Homo sapiens protein ( Homo sapiens
cDNA FLJ12471 fis, clone NT2RM1000894, highly similar to
DNA-DIRECTED RNA POLYMERASE I 135 KD POLYPEPTIDE (EC
2.7.7.6). ).
Length = 1079
Score = 86.2 bits (204), Expect = 9e-17
Identities = 36/66 (54%), Positives = 54/66 (81%)
Frame = +1
Query: 454 IERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERLARMLLVTRRNY 633
I++ LGY+PIM+KSK+C+L +L P+ LIE +E A+E GGYF+I G E++ RML++ RRN+
Sbjct: 74 IKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNF 133
Query: 634 PVAIKR 651
P+A+ R
Sbjct: 134 PIAMIR 139
Score = 40.3 bits (90), Expect = 0.006
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 85 KKLAQNPSLAYTSHPDYRKPPKIANPYLQSLGAPHIDSFNYMLDDGLKFAI-ADL 246
+ L PSL + + P Y P + LQ L H++SFNY + +GL A+ AD+
Sbjct: 8 RNLPSGPSLKHLTDPSYGIPREQQKAALQELTRAHVESFNYAVHEGLGLAVQADI 62
>BC046238-1|AAH46238.1| 1133|Homo sapiens polymerase (RNA) III (DNA
directed) polypeptide B protein.
Length = 1133
Score = 54.0 bits (124), Expect = 4e-07
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = +1
Query: 166 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 342
++ L HIDSFNY ++ +K + + EKV D + K N+ +
Sbjct: 36 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKVTSDADPMWYLKYLNIYVGLP 85
Query: 343 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMC 504
V+ ++ V P ECR R TY + + + R + +G +PIM++S C
Sbjct: 86 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 145
Query: 505 HLADLSPEELIEKNEHADEWGGYFVIKGHERL 600
L +P E + NE + GGYF++KG E++
Sbjct: 146 VLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 177
>AY092084-1|AAM18214.1| 1133|Homo sapiens RNA polymerase III subunit
RPC2 protein.
Length = 1133
Score = 54.0 bits (124), Expect = 4e-07
Identities = 43/152 (28%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Frame = +1
Query: 166 LQSLGAPHIDSFNYMLDDGLKFAIADLLPSEFELPSGEKVKVTIDEAAFAKP-NVPMDTV 342
++ L HIDSFNY ++ +K + + EKV D + K N+ +
Sbjct: 36 VKGLVKQHIDSFNYFINVEIKKI----------MKANEKVTSDADPMWYLKYLNIYVGLP 85
Query: 343 GVK-----SQVVLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMC 504
V+ ++ V P ECR R TY + + + R + +G +PIM++S C
Sbjct: 86 DVEESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLRSSNC 145
Query: 505 HLADLSPEELIEKNEHADEWGGYFVIKGHERL 600
L +P E + NE + GGYF++KG E++
Sbjct: 146 VLTGKTPAEFAKLNECPLDPGGYFIVKGVEKV 177
>X63563-1|CAA45124.1| 1174|Homo sapiens RNA polymerase II 140 kDa
subunit protein.
Length = 1174
Score = 49.2 bits (112), Expect = 1e-05
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Frame = +1
Query: 361 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIKSKMCHLADLS 522
++P E R R TY L + +T + +G + +G +PIM++S C L L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLT 167
Query: 523 PEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPVAIKRS 654
+L E NE + GGYF+I G E+ +A+ + T Y A K S
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDS 213
>BC023503-1|AAH23503.2| 1174|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide B, 140kDa protein.
Length = 1174
Score = 49.2 bits (112), Expect = 1e-05
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Frame = +1
Query: 361 VLPTECRQRAATYKGELKIRVTLCI--DGRSVTIERS----LGYLPIMIKSKMCHLADLS 522
++P E R R TY L + +T + +G + +G +PIM++S C L L+
Sbjct: 108 MMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLT 167
Query: 523 PEELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPVAIKRS 654
+L E NE + GGYF+I G E+ +A+ + T Y A K S
Sbjct: 168 DRDLCELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFAKKDS 213
>D42108-1|BAA07688.1| 997|Homo sapiens Phospholipase C protein.
Length = 997
Score = 29.9 bits (64), Expect = 8.3
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = +1
Query: 247 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG-VKSQVVLPTECRQRAATYKGELKIRV 423
LPSE LPS EK+K I P+ P G V + R+ + Y GE K ++
Sbjct: 423 LPSESYLPSPEKLKRMIIVKGKKLPSDPDVLEGEVTDEDEEAQMSRRMSVDYNGEQK-QI 481
Query: 424 TLCID-GRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 600
LC + V+I +S+ Y + K + ++ E + A+E+ FV + L
Sbjct: 482 RLCRELSDLVSICKSVQYRDFELSMKSQNYWEMCSFSETEASRIANEYPEDFVNYNKKFL 541
Query: 601 ARM 609
+R+
Sbjct: 542 SRI 544
>BC111985-1|AAI11986.1| 997|Homo sapiens phospholipase C-like 1
protein.
Length = 997
Score = 29.9 bits (64), Expect = 8.3
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = +1
Query: 247 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG-VKSQVVLPTECRQRAATYKGELKIRV 423
LPSE LPS EK+K I P+ P G V + R+ + Y GE K ++
Sbjct: 423 LPSESYLPSPEKLKRMIIVKGKKLPSDPDVLEGEVTDEDEEAEMSRRMSVDYNGEQK-QI 481
Query: 424 TLCID-GRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 600
LC + V+I +S+ Y + K + ++ E + A+E+ FV + L
Sbjct: 482 RLCRELSDLVSICKSVQYRDFELSMKSQNYWEMCSFSETEASRIANEYPEDFVNYNKKFL 541
Query: 601 ARM 609
+R+
Sbjct: 542 SRI 544
>BC101531-1|AAI01532.1| 997|Homo sapiens phospholipase C-like 1
protein.
Length = 997
Score = 29.9 bits (64), Expect = 8.3
Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Frame = +1
Query: 247 LPSEFELPSGEKVKVTIDEAAFAKPNVPMDTVG-VKSQVVLPTECRQRAATYKGELKIRV 423
LPSE LPS EK+K I P+ P G V + R+ + Y GE K ++
Sbjct: 423 LPSESYLPSPEKLKRMIIVKGKKLPSDPDVLEGEVTDEDEEAEMSRRMSVDYNGEQK-QI 481
Query: 424 TLCID-GRSVTIERSLGYLPIMIKSKMCHLADLSPEELIEKNEHADEWGGYFVIKGHERL 600
LC + V+I +S+ Y + K + ++ E + A+E+ FV + L
Sbjct: 482 RLCRELSDLVSICKSVQYRDFELSMKSQNYWEMCSFSETEASRIANEYPEDFVNYNKKFL 541
Query: 601 ARM 609
+R+
Sbjct: 542 SRI 544
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,326,443
Number of Sequences: 237096
Number of extensions: 1927802
Number of successful extensions: 3636
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3624
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7310122300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -