Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25d02
(654 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical pr... 120 1e-27
U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical pr... 57 1e-08
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 52 3e-07
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 33 0.18
AY037802-1|AAK94767.1| 669|Caenorhabditis elegans GLY-2 protein. 30 1.6
AY037800-1|AAK94765.1| 661|Caenorhabditis elegans GLY-2 protein. 30 1.6
AF154122-1|AAF74523.1| 669|Caenorhabditis elegans N-acetylgluco... 30 1.6
AC006625-9|AAK68273.1| 669|Caenorhabditis elegans Glycosylation... 30 1.6
AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical... 29 2.9
U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical pr... 29 3.8
U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical pr... 29 3.8
U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical pr... 28 6.7
>Z75535-1|CAA99827.1| 1127|Caenorhabditis elegans Hypothetical
protein F14B4.3 protein.
Length = 1127
Score = 120 bits (288), Expect = 1e-27
Identities = 62/158 (39%), Positives = 96/158 (60%), Gaps = 3/158 (1%)
Frame = +1
Query: 187 HIDSFNYMLDDGLKFAIADLLPSE-FELPSGEKVKVTIDEAAFAKPNVPMDTVGVKSQV- 360
H+DSF++++ G +FA A +P+E F L +G+ V + A KP + +
Sbjct: 9 HVDSFDFLVSKGCQFA-AQAVPAEKFRLKNGDAVTMKFTSAQLHKPTLDTGAKLTSDTLP 67
Query: 361 VLPTECRQRAATYKGELKIRVTLCIDG-RSVTIERSLGYLPIMIKSKMCHLADLSPEELI 537
+LP ECRQR TY G LK+ + + ++G R IE LG +PIM++S+ CHL +S +EL+
Sbjct: 68 LLPAECRQRGLTYAGNLKVGIDVHVNGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELV 127
Query: 538 EKNEHADEWGGYFVIKGHERLARMLLVTRRNYPVAIKR 651
E E GGYF++ G E++ R+L+ RRN+P+AI R
Sbjct: 128 VAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIR 165
>U00050-9|AAA50695.2| 1154|Caenorhabditis elegans Hypothetical
protein F09F7.3 protein.
Length = 1154
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 361 VLPTECRQRAATYKGELKIRVTLCIDGRSV-TIERSLGYLPIMIKSKMCHLADLSPEELI 537
+ P ECR R TY + + + + V + +G +PIM++S C L DL+ EEL
Sbjct: 100 ITPQECRLRDMTYSAPISVDIEYTRGNQRVFKKDLIIGRMPIMLRSSKCILRDLAEEELA 159
Query: 538 EKNEHADEWGGYFVIKGHERL 600
E + GGYFV+KG E++
Sbjct: 160 RVQECPYDPGGYFVVKGSEKV 180
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 52.4 bits (120), Expect = 3e-07
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Frame = +1
Query: 361 VLPTECRQRAATYKGELKIRVTLCIDGRSVTIERS-----LGYLPIMIKSKMCHLADLSP 525
++P E R R TY L + +T + E+ +G +P+M++S C L++++
Sbjct: 115 MMPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTD 174
Query: 526 EELIEKNEHADEWGGYFVIKGHER--LARMLLVTRRNYPVAIK 648
+L E NE + GGYFVI G E+ +A+ + T Y ++K
Sbjct: 175 RDLTELNECPLDPGGYFVINGSEKVLIAQEKMATNTVYVFSMK 217
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical protein
T23F1.5 protein.
Length = 1262
Score = 33.1 bits (72), Expect = 0.18
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 11/82 (13%)
Frame = +1
Query: 142 PPKIANPYLQSLGAPHIDSFNY------MLDDGLKFAIADLLPSEFELPSGEKVKVTIDE 303
PP NPY GAP + + L+DG+ F + +LP E+ + ++ +V
Sbjct: 887 PPPRNNPYAPPEGAPRVPNRLIGKPRILCLEDGISFEVKTILPLTGEVFANDRKRVLECH 946
Query: 304 AAF---AKPN--VPMDTVGVKS 354
+F AKP +P T GVK+
Sbjct: 947 KSFTEEAKPKMFLPFSTCGVKN 968
>AY037802-1|AAK94767.1| 669|Caenorhabditis elegans GLY-2 protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +1
Query: 157 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 261
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530
>AY037800-1|AAK94765.1| 661|Caenorhabditis elegans GLY-2 protein.
Length = 661
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +1
Query: 157 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 261
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 485 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 522
>AF154122-1|AAF74523.1| 669|Caenorhabditis elegans
N-acetylglucosaminyltransferase V protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +1
Query: 157 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 261
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530
>AC006625-9|AAK68273.1| 669|Caenorhabditis elegans Glycosylation
related protein 2 protein.
Length = 669
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +1
Query: 157 NPYLQSLGAPH---IDSFNYM-LDDGLKFAIADLLPSEF 261
NPY++ +G PH +D FN + L++ +K AI+ L P F
Sbjct: 493 NPYMEKIGEPHVITVDIFNELELEEAIKRAIS-LKPKHF 530
>AF040655-12|AAB95039.1| 507|Caenorhabditis elegans Hypothetical
protein T24E12.1 protein.
Length = 507
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -2
Query: 383 CRHSVGRTT*DLTPTVSMGTLGLANAASSIVTLTF--SPLGNSNSDGNRSAIANFRPSSS 210
CRH+ R L TV T L + + L SP+ N + S I++ PSSS
Sbjct: 45 CRHTQARRIFSLEATVRAQTQELKQLKAEVQALRQPNSPVSKVNMNSPESGISSSSPSSS 104
Query: 209 I*LNES 192
L +S
Sbjct: 105 TCLEKS 110
>U00065-8|AAL02473.1| 501|Caenorhabditis elegans Hypothetical
protein D1044.2b protein.
Length = 501
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 350 LTPTVSMGTLGLANAASSIVTLTFSPLGNSNSDGNRSAIANFRPSSS 210
+ PT+ G G +++T+T SP+GN A+ RP+ S
Sbjct: 116 IVPTLVRGG-GTVTRGRNVLTVTTSPIGNQQRQQTTKAVTRPRPNFS 161
>U00065-7|AAL02474.1| 1090|Caenorhabditis elegans Hypothetical
protein D1044.2c protein.
Length = 1090
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 350 LTPTVSMGTLGLANAASSIVTLTFSPLGNSNSDGNRSAIANFRPSSS 210
+ PT+ G G +++T+T SP+GN A+ RP+ S
Sbjct: 666 IVPTLVRGG-GTVTRGRNVLTVTTSPIGNQQRQQTTKAVTRPRPNFS 711
>U00065-6|AAL02472.1| 1051|Caenorhabditis elegans Hypothetical
protein D1044.2a protein.
Length = 1051
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -2
Query: 350 LTPTVSMGTLGLANAASSIVTLTFSPLGNSNSDGNRSAIANFRPSSS 210
+ PT+ G G +++T+T SP+GN A+ RP+ S
Sbjct: 666 IVPTLVRGG-GTVTRGRNVLTVTTSPIGNQQRQQTTKAVTRPRPNFS 711
>Z75530-3|CAA99793.1| 702|Caenorhabditis elegans Hypothetical
protein C47E8.5 protein.
Length = 702
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Frame = -1
Query: 369 WEDHLRFNPYCIHGNIGFSECCFID--CHFDLFTTR 268
WEDHL + + G + F F+ FDLF +
Sbjct: 291 WEDHLAVKHFSVEGQLEFRALLFVPQRAPFDLFENK 326
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,098,808
Number of Sequences: 27780
Number of extensions: 313466
Number of successful extensions: 753
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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