Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25d01
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    44   1e-06
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.97 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.7  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   2.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.8  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   6.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.0  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 34/150 (22%), Positives = 75/150 (50%), Gaps = 9/150 (6%)
 Frame = +2

Query: 14  GYIDVVVNNAAVSLENSLEG-----IRRLVDINVTALVMSTLKAIEIMRVDKTGKGGTII 178
           G ID+++NNA ++++ +L+       +++ DIN+  L     + +++M+  K    G I+
Sbjct: 83  GAIDILINNATINIDVTLQNDEVLDWKKIFDINLLGLTCMIQEVLKLMK-KKGINNGIIV 141

Query: 179 NISSIAALK--QFCPSVFVYCGTKSAVLQFSNCIGKQEYFSKTGVRVITVCYGPTDTDLV 352
           NI+  + L       +   Y  +K A+   ++C+  +    ++ ++VI++     +TD+ 
Sbjct: 142 NINDASGLNLLPMNRNRPAYLASKCALTTLTDCLRSELAQCESNIKVISISPDLVETDMT 201

Query: 353 P--LMINIDDSINPEIRSNIDAQKLQTAES 436
              L  N   ++ P+  SN     LQT ++
Sbjct: 202 AQWLKENSRLALKPKDVSNCVLFALQTPDN 231


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.97
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 278 KQEYFSKTGVR-VITVCYGPTDTDLVPLMINIDDSINPEIRSNIDAQKLQ 424
           K  +F   GV  +I  CYG  +  +    +     I+   +  ++ QKLQ
Sbjct: 250 KTTFFESCGVADLIATCYGGRNRKICEAFVKTGKKISELEKEMLNGQKLQ 299


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 523 CDFCNFAVKYKPST 482
           CD C+  VKY P+T
Sbjct: 356 CDACSMGVKYIPNT 369


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/25 (28%), Positives = 12/25 (48%)
 Frame = -3

Query: 500 QIQAKYYRSHHSCRLPGDHVPLIPP 426
           Q+   Y    +  ++ G H+P  PP
Sbjct: 84  QVSITYVADENGFQVQGSHIPTAPP 108


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -2

Query: 195 AIDEMFIIVPPFPVLSTRIISIAFNVLMTKAVTFMSTSLRIPS 67
           +I  + ++    P  S   I++  N+L+++ + F+  S  IPS
Sbjct: 248 SISYLSVLAFYLPADSGEKIALCINILLSQTMFFLLISEIIPS 290


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 671 FCLHFSTYFLNVDTGFEN 724
           FCL ++ Y  ++ + FEN
Sbjct: 7   FCLRWNNYQSSITSAFEN 24


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 671 FCLHFSTYFLNVDTGFEN 724
           FCL ++ Y  ++ + FEN
Sbjct: 7   FCLRWNNYQSSITSAFEN 24


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 341 TDLVPLMINIDDSINPEIRSNIDAQK 418
           TD+V L++  DD +  +   +I+  K
Sbjct: 217 TDIVVLVVAADDGVKEQTLQSIEMAK 242


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 470 HSCRLPGDHVPLIPPFV 420
           HS R  GD   ++PP +
Sbjct: 597 HSARRSGDVAVIVPPII 613


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,220
Number of Sequences: 438
Number of extensions: 4333
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)