Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c23
(638 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 34 0.015
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 31 0.11
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 31 0.19
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 30 0.25
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 28 1.3
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 27 1.7
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi... 27 1.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 2.3
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 27 2.3
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip... 26 4.0
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 7.0
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 9.2
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe... 25 9.2
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 25 9.2
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 34.3 bits (75), Expect = 0.015
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +1
Query: 409 QYLLKWKGYKEEESTWEPVENL-DCEELIK 495
+Y +KW GY ++TWEP +NL E+++K
Sbjct: 39 EYYIKWAGYDWYDNTWEPEQNLFGAEKVLK 68
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +1
Query: 400 GKIQYLLKWKGYKE-EESTWEPVENLD-CEELIKTF 501
G +YLLKW+GY + ++TW + C++LI+ +
Sbjct: 96 GGYEYLLKWEGYDDPSDNTWSSEADCSGCKQLIEAY 131
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 30.7 bits (66), Expect = 0.19
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 412 YLLKWKGYKEEESTWEPVENL 474
Y ++W Y TWEP ENL
Sbjct: 27 YRIRWLNYSSRSDTWEPPENL 47
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 409 QYLLKWKGYKE-EESTWEPVEN-LDCEELIKTF 501
QY LKW+GY + ++TW E+ C ELI +
Sbjct: 194 QYYLKWEGYDDPSDNTWNDEEDCAGCLELIDAY 226
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 27.9 bits (59), Expect = 1.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +1
Query: 409 QYLLKWKGYKEEESTWEPVENL 474
++L+KW + TWEP N+
Sbjct: 215 EFLIKWVNFSHLHCTWEPYNNI 236
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 400 GKIQYLLKWKGYKEEESTWE 459
G ++YL+KWK + TWE
Sbjct: 302 GSVEYLVKWKQLLYDFCTWE 321
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 481 HSLSFQQAPKYSLPPYSLSISINIGSF 401
H+LS+Q A +Y+LP + IS GSF
Sbjct: 387 HNLSYQLARQYALPVKGVFISEPAGSF 413
>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 965
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 422 FNKYWI-FPLTVRLLRTFSTTYSSSLDASLVSVFFSFL 312
F +YW FPLT + +FS T LD +L + FSF+
Sbjct: 749 FLQYWYWFPLTHFMSLSFSPTALIGLDKNLNAPKFSFI 786
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 397 KGKIQYLLKWKGYKEEESTWEPVENL 474
K QYL+KW+ +TWE L
Sbjct: 227 KSSYQYLIKWQEVSHLHNTWEDYSTL 252
Score = 26.6 bits (56), Expect = 3.0
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = +1
Query: 397 KGKIQYLLKWKGYKEEESTWEPVE 468
+GK +Y +KW+ + TWE +
Sbjct: 317 EGKTEYFVKWRQLPYDNCTWEDAD 340
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.1 bits (57), Expect = 2.3
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 413 YWIFPLTVRLLRTFSTTYSSSLDASLVSVFF 321
+WIFP+ V+ +R + S ++ +++FF
Sbjct: 460 FWIFPIAVQFMRGITVGVIGSSGSAQLAIFF 490
>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
antiporter Sod22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 759
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 294 KSGTFSQNHENSRKRRCYQAPKMARSKYMAPLIESVTKSDNRIIRF 157
++G S N SR RR +AP A S +P+ E IRF
Sbjct: 706 RNGLLSDNVSESRSRRPSRAPSAAVSSEGSPVEEDNEAQHRPNIRF 751
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 635 SSADETLAPRPFLPELVSS 579
SS +TLA RP LP+L S+
Sbjct: 203 SSRQQTLASRPSLPDLTSA 221
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 25.0 bits (52), Expect = 9.2
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -3
Query: 333 LRFLLFFTHAVLRKSGTFSQNHENSRKRRCYQAPKMARSKYMAPLIES 190
L +LF TH LRK+ + +N R R A +++ SK ++E+
Sbjct: 203 LLIVLFLTHFRLRKAEREKRRLQNERNRE-RNAQRVSASKLDLAILEA 249
>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 264
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 391 TVKGKIQYLLKWKGYKEEESTWEPVENLD 477
++K +L KWK + S +PV+NLD
Sbjct: 195 SIKSLTTWLPKWKKNDFKTSNSQPVKNLD 223
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 9.2
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -2
Query: 376 LSPRHILPRSMLH--WSPFSSLFYPCCA 299
+SP H L+ W+PFS L Y CA
Sbjct: 242 ISPLHTQSTDKLYTIWTPFSELHYFYCA 269
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,233,275
Number of Sequences: 5004
Number of extensions: 41706
Number of successful extensions: 120
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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