Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c23
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0028 - 359988-359996,360228-360332,360415-360536,360676-36... 44 1e-04
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662... 41 0.001
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 40 0.002
03_01_0227 - 1797353-1798519 39 0.004
10_05_0046 + 8516043-8516425,8517908-8518019,8518276-8518377,851... 32 0.44
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 30 1.8
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 30 1.8
11_03_0201 + 11578163-11578915 30 1.8
05_01_0291 - 2274587-2274676,2274871-2275076,2275638-2275719,227... 30 1.8
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 29 2.4
07_03_1567 - 27772815-27773302,27773471-27773561,27773641-277739... 29 3.1
10_02_0198 - 6611775-6612611 28 5.4
11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644 28 7.2
10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834 28 7.2
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 28 7.2
12_02_0637 - 21437244-21438080 27 9.5
08_02_0235 + 14627648-14628889 27 9.5
07_01_1086 - 9930311-9931993 27 9.5
>10_01_0028 -
359988-359996,360228-360332,360415-360536,360676-360763,
360988-361056,361132-361461,361544-361610,361695-361753,
361838-362056,362224-362289,362370-362500,362683-362782,
362864-363001,363111-363218,363627-363723,363806-364257
Length = 719
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 406 IQYLLKWKGYKEEESTWEPVENL-DCEELIKTF 501
+ + ++WKGY EE TWEP+ENL DC IK F
Sbjct: 434 LYFKVQWKGYGREEDTWEPIENLRDCPLKIKEF 466
>03_02_0234 +
6625417-6626184,6626314-6626339,6626435-6626531,
6627009-6627116,6627194-6627328,6627429-6627528,
6627763-6627974,6628060-6628125,6628231-6628464,
6628583-6628641,6628716-6628782,6628863-6629192,
6629267-6629335,6629417-6629503,6629605-6629692,
6630057-6630178,6630251-6630355,6630442-6630485,
6630558-6630627,6630711-6630814,6630980-6631189,
6632935-6633018,6633291-6634003,6634115-6634649,
6634703-6634789,6634826-6634970,6635049-6635125,
6635215-6635359,6635462-6635626,6635725-6635958
Length = 1761
Score = 40.7 bits (91), Expect = 0.001
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 391 TVKGKIQYLLKWKGYKEEESTWEPVENL-DCEELIKTF 501
T K + + ++WKGY TWEP++ L DC E IK F
Sbjct: 574 TGKNGLWFKVRWKGYDPSYDTWEPIDGLSDCPERIKEF 611
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +1
Query: 397 KGKIQYLLKWKGYKEEESTWEPVENL-DCEELIKTF 501
K + + ++WKGY TWEPVE L +C+E I+ F
Sbjct: 953 KHGLYFKVRWKGYGPHHDTWEPVEGLRNCKEAIRDF 988
>03_01_0227 - 1797353-1798519
Length = 388
Score = 38.7 bits (86), Expect = 0.004
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +1
Query: 379 LNKRTV---KGKIQYLLKWKGYKEEESTWEPVENLDCEEL 489
+NKR +GK +YL+KW EE+TWEP EN+D E L
Sbjct: 327 VNKREAAEGEGKWEYLVKWVDI--EEATWEPAENVDAELL 364
>10_05_0046 +
8516043-8516425,8517908-8518019,8518276-8518377,
8518605-8518657,8518976-8519062,8519162-8519830,
8520154-8520214,8520295-8520342
Length = 504
Score = 31.9 bits (69), Expect = 0.44
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 427 KGYKEEESTWEPVENLD-CEELIKTF 501
+G+ E +TWEP+ENL C ++I F
Sbjct: 218 RGWPESANTWEPLENLSACSDIIDAF 243
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 385 KRTVKGKIQYLLKWKGYKEEESTWE 459
+R KGK+QYL+KW G + E W+
Sbjct: 115 RRLRKGKLQYLVKW-GSQWEGGAWD 138
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 288 GTFSQNHENSRKRRCYQAPKMARSKYMAPLIESVTK 181
G+F Q E R RR Y+A K++ +Y++ + E ++K
Sbjct: 439 GSFPQTVELRRVRREYKAKKISEDEYVSAIKEEISK 474
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = -3
Query: 288 GTFSQNHENSRKRRCYQAPKMARSKYMAPLIESVTK 181
G+F Q E R RR Y+A K++ +Y++ + E ++K
Sbjct: 439 GSFPQTVELRRVRREYKAKKISEEEYISAIKEEISK 474
>11_03_0201 + 11578163-11578915
Length = 250
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 382 NKRTVKGKIQ--YLLKWKGYKEEESTWEPVENL 474
N+R + K+ Y ++W + EEE+TWE + L
Sbjct: 198 NERRTRNKVTRFYRVQWSHHSEEEATWEREDEL 230
>05_01_0291 -
2274587-2274676,2274871-2275076,2275638-2275719,
2275948-2276064,2276489-2276751,2277548-2277620,
2278324-2278427,2278613-2278706
Length = 342
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 391 TVKGKIQYLLKWKGYKEEESTWEPV 465
T G QYLL++ Y +EE TW V
Sbjct: 73 TETGSFQYLLEYLDYPDEEKTWTEV 97
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +1
Query: 409 QYLLKWKGYKEEESTWEP 462
++L+KWKG E+TWEP
Sbjct: 473 EFLVKWKGLDYCEATWEP 490
>07_03_1567 -
27772815-27773302,27773471-27773561,27773641-27773988,
27774929-27775110,27775191-27775368,27775453-27775605,
27775993-27776232,27776369-27776449,27776485-27776730,
27777151-27777240,27777536-27777778,27778365-27778529,
27779017-27779080,27779162-27779286,27779383-27779476,
27779647-27779714,27779798-27779989,27780618-27780752,
27780847-27780934,27781014-27781107,27781484-27781547,
27781657-27781708,27781911-27782014,27782099-27782158,
27782687-27782770,27782892-27783125,27783442-27783864,
27784675-27784736,27784867-27785521
Length = 1700
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 409 QYLLKWKGYKEEESTWE 459
+YL+KW+G ESTWE
Sbjct: 526 EYLVKWQGLPYAESTWE 542
>10_02_0198 - 6611775-6612611
Length = 278
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = +1
Query: 379 LNKRTVKGKIQYLLK--WKGYKEEESTWEPVENL 474
+++R + ++ + K W + EEESTWE + L
Sbjct: 225 IDERRTRNRVIHFCKVQWSNHSEEESTWEREDEL 258
>11_01_0792 + 6679002-6679603,6738490-6738520,6738532-6739644
Length = 581
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 382 NKRTVKGKIQYLLK--WKGYKEEESTWEPVENL 474
N+R + ++ K W + EEESTWE + L
Sbjct: 529 NERRTRNRVIRFCKVQWSNHSEEESTWEREDEL 561
>10_05_0084 + 8956637-8956681,8957722-8957856,8958040-8958834
Length = 324
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 382 NKRTVKGKIQYLLK--WKGYKEEESTWEPVENL 474
N+R + ++ K W + EEESTWE + L
Sbjct: 272 NERRTRNRVIRFCKVQWSNHSEEESTWEREDEL 304
>04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +1
Query: 382 NKRTVKGKIQYLLK--WKGYKEEESTWEPVENL 474
N+R + ++ K W + EEESTWE + L
Sbjct: 1236 NERRTRNRVIRFCKVQWSNHSEEESTWEREDEL 1268
>12_02_0637 - 21437244-21438080
Length = 278
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 385 KRTVKGKIQYL-LKWKGYKEEESTWEPVENL 474
+RT I++ ++W + EEESTWE + L
Sbjct: 228 RRTRNRVIRFCKVQWSNHSEEESTWEREDEL 258
>08_02_0235 + 14627648-14628889
Length = 413
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 385 KRTVKGKIQYL-LKWKGYKEEESTWEPVENL 474
+RT I++ ++W + EEESTWE + L
Sbjct: 363 RRTRNRVIRFCKVQWSNHSEEESTWEREDEL 393
>07_01_1086 - 9930311-9931993
Length = 560
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 385 KRTVKGKIQYL-LKWKGYKEEESTWEPVENL 474
+RT I++ ++W + EEESTWE + L
Sbjct: 510 RRTRNRVIRFCKVQWSNHSEEESTWEREDEL 540
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,791
Number of Sequences: 37544
Number of extensions: 236096
Number of successful extensions: 591
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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