Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte25c23
(638 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 56 2e-08
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 56 2e-08
Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical pr... 50 1e-06
Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical pr... 50 1e-06
AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain... 50 1e-06
AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain... 50 1e-06
U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical pr... 44 1e-04
L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans chrom... 42 5e-04
U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical pr... 33 0.17
U53180-2|AAK68284.1| 477|Caenorhabditis elegans Hypothetical pr... 32 0.30
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a... 32 0.40
U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm rec... 30 1.6
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical pr... 28 6.5
U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel t... 28 6.5
DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-t... 28 6.5
AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-t... 28 6.5
AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical ... 28 6.5
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 27 8.6
AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 56.0 bits (129), Expect = 2e-08
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +1
Query: 379 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
LNKR +G +Y +KW+G+ E E +WEP+ENL C+ +I+ +
Sbjct: 43 LNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 56.0 bits (129), Expect = 2e-08
Identities = 19/41 (46%), Positives = 30/41 (73%)
Frame = +1
Query: 379 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
LNKR +G +Y +KW+G+ E E +WEP+ENL C+ +I+ +
Sbjct: 43 LNKRLTRGGSEYYIKWQGFPESECSWEPIENLQCDRMIQEY 83
>Z92803-4|CAB54267.2| 303|Caenorhabditis elegans Hypothetical
protein K01G5.2c protein.
Length = 303
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/42 (47%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ F
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>Z92803-3|CAB07243.2| 301|Caenorhabditis elegans Hypothetical
protein K01G5.2b protein.
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/42 (47%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ F
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>Z92803-2|CAB07241.1| 175|Caenorhabditis elegans Hypothetical
protein K01G5.2a protein.
Length = 175
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/42 (47%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ F
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>AF123574-1|AAD21197.1| 175|Caenorhabditis elegans chromo-domain
protein protein.
Length = 175
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/42 (47%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ F
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>AF123573-1|AAD21196.1| 301|Caenorhabditis elegans chromo-domain
protein protein.
Length = 301
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/42 (47%), Positives = 32/42 (76%), Gaps = 1/42 (2%)
Frame = +1
Query: 379 LNKRTVK-GKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
L+KRT K G+ ++L++W+G+ E +S+WEP ENL C E++ F
Sbjct: 25 LDKRTGKAGRDEFLIQWQGFPESDSSWEPRENLQCVEMLDEF 66
>U61944-4|AAB03120.1| 891|Caenorhabditis elegans Hypothetical
protein T12E12.2 protein.
Length = 891
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +1
Query: 403 KIQYLLKWKGYKEEESTWEPVENLD-CEELIK 495
K YL+ W+GY +E TWEP ENL+ CEEL K
Sbjct: 48 KYAYLVHWRGYDWKERTWEPEENLENCEELQK 79
>L13200-3|AAA28192.1| 304|Caenorhabditis elegans C.elegans
chromodomain proteinprotein 1 protein.
Length = 304
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 379 LNKRTVKGKIQYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
L R KGK ++ +KW GY ++WEP EN+ LI+ F
Sbjct: 14 LEHRKKKGKSEFYIKWLGYDHTHNSWEPKENIVDPTLIEAF 54
>U23169-4|AAC46697.1| 706|Caenorhabditis elegans Hypothetical
protein C29H12.5 protein.
Length = 706
Score = 33.1 bits (72), Expect = 0.17
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 412 YLLKWKGYKEEESTWEPVENL 474
+L+KW GY +E TWEP N+
Sbjct: 95 FLVKWLGYGNKEMTWEPESNI 115
>U53180-2|AAK68284.1| 477|Caenorhabditis elegans Hypothetical
protein D1014.6 protein.
Length = 477
Score = 32.3 bits (70), Expect = 0.30
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Frame = +3
Query: 102 KFFLSWTIIIPPNHSTE*EIE*FDCHFSLLTQ*AAPYILNAPF---WELDSSDA---YVN 263
KFF WT +I + E E F SLL P I+N F W + SD YVN
Sbjct: 297 KFFSKWTAVIDIDERIEMRSESFKTIISLLDSIRDPNIVNLHFKVQWVIKGSDTPAEYVN 356
Query: 264 SRDFV 278
++ +
Sbjct: 357 EKELI 361
>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
assigned gene nameprotein 192 protein.
Length = 2957
Score = 31.9 bits (69), Expect = 0.40
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 415 LLKWKGYKEEESTWEPVENLDCEEL 489
L+KWK EE TWEP+E + +++
Sbjct: 1123 LIKWKSLGYEEVTWEPIEMIPADKV 1147
>U41992-6|AAA83357.1| 270|Caenorhabditis elegans Hypothetical
protein F32E10.2 protein.
Length = 270
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = +1
Query: 379 LNKRTVKGKIQYLLKWKGYKE---EESTWEPVENLD-CEELIKTF 501
L R VKG YL++WKGY WE E+LD C++L+ +
Sbjct: 93 LAHRKVKGSPLYLVQWKGYPHPVWNSEMWE--EDLDNCKDLLAAY 135
>Z36753-7|CAA85339.1| 339|Caenorhabditis elegans Hypothetical
protein T09A5.8 protein.
Length = 339
Score = 30.3 bits (65), Expect = 1.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 418 LKWKGYKEEESTWEPVENL 474
++W GY +E TWEP E+L
Sbjct: 43 VRWLGYGADEDTWEPEEDL 61
>AF047655-11|AAC04405.1| 336|Caenorhabditis elegans Seven tm
receptor protein 63 protein.
Length = 336
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 481 HSLSFQQAPKYSLPPYSLSISINIGSF 401
+ L + PKY++ PY+L S+N G+F
Sbjct: 170 YQLLISELPKYNITPYNLDGSVNWGNF 196
>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical
protein H06O01.2 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 409 QYLLKWKGYKEEESTWEPVENLDCEELIKTF 501
+YL+KW G + TWE E + E IK +
Sbjct: 333 EYLIKWSGLPYSDCTWED-EKMVAPEQIKAY 362
>Z82269-6|CAB05206.3| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -3
Query: 363 IFFLARCFTGLRFLLFFTHAVLRKSGTFSQNHENSRKRRCYQAPKMARSKYMAPLIESVT 184
+FFL F+G+ F F + K + S N + ++ + + P + K +A L ++
Sbjct: 16 VFFLLFIFSGINFQSFLQLLHIFKMASNSTN--SKKQNKSTEEPPSSVQKLLASLQQAQN 73
Query: 183 KSD 175
KSD
Sbjct: 74 KSD 76
>U40419-4|AAA81424.3| 1785|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 2 protein.
Length = 1785
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -1
Query: 329 VFFSFLPMLC*ERAALFHKITRIHVSVAAIKLPKWRVQNIWRRLLSQ*RKVTIESFDFLF 150
V++ +L L R +F + R S+ KLPK R++ I +R Q + VTI F+F
Sbjct: 176 VYYPWLGALRSARPFIFLRFIR---SIVRFKLPKNRIKLIIKRSSQQIQNVTIFFMFFVF 232
Query: 149 GRMI 138
I
Sbjct: 233 SYAI 236
>DQ917241-1|ABI94564.1| 1763|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1763
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -1
Query: 329 VFFSFLPMLC*ERAALFHKITRIHVSVAAIKLPKWRVQNIWRRLLSQ*RKVTIESFDFLF 150
V++ +L L R +F + R S+ KLPK R++ I +R Q + VTI F+F
Sbjct: 154 VYYPWLGALRSARPFIFLRFIR---SIVRFKLPKNRIKLIIKRSSQQIQNVTIFFMFFVF 210
Query: 149 GRMI 138
I
Sbjct: 211 SYAI 214
>AY555272-1|AAS65872.1| 1785|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1785
Score = 27.9 bits (59), Expect = 6.5
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -1
Query: 329 VFFSFLPMLC*ERAALFHKITRIHVSVAAIKLPKWRVQNIWRRLLSQ*RKVTIESFDFLF 150
V++ +L L R +F + R S+ KLPK R++ I +R Q + VTI F+F
Sbjct: 176 VYYPWLGALRSARPFIFLRFIR---SIVRFKLPKNRIKLIIKRSSQQIQNVTIFFMFFVF 232
Query: 149 GRMI 138
I
Sbjct: 233 SYAI 236
>AL021488-7|CAJ43918.1| 809|Caenorhabditis elegans Hypothetical
protein F52G2.1a protein.
Length = 809
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -3
Query: 363 IFFLARCFTGLRFLLFFTHAVLRKSGTFSQNHENSRKRRCYQAPKMARSKYMAPLIESVT 184
+FFL F+G+ F F + K + S N + ++ + + P + K +A L ++
Sbjct: 16 VFFLLFIFSGINFQSFLQLLHIFKMASNSTN--SKKQNKSTEEPPSSVQKLLASLQQAQN 73
Query: 183 KSD 175
KSD
Sbjct: 74 KSD 76
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 397 KGKIQYLLKWKGYKEEESTWE 459
K + YL+KWK E +TWE
Sbjct: 514 KSQQDYLVKWKELSYEHATWE 534
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 397 KGKIQYLLKWKGYKEEESTWE 459
K + YL+KWK E +TWE
Sbjct: 514 KSQQDYLVKWKELSYEHATWE 534
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 397 KGKIQYLLKWKGYKEEESTWE 459
K + YL+KWK E +TWE
Sbjct: 514 KSQQDYLVKWKELSYEHATWE 534
>AC026301-8|AAK68889.1| 302|Caenorhabditis elegans Hypothetical
protein Y54F10BM.10 protein.
Length = 302
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 403 KIQYLLKWKGYKEEESTWEPVENLDCEEL 489
KI YL +WK K + EP+EN+ E+L
Sbjct: 190 KITYLEQWKLTKSFKYFGEPLENIPLEKL 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,046,977
Number of Sequences: 27780
Number of extensions: 219639
Number of successful extensions: 582
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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