Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte25c21
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    32   0.090
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.63 
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    26   5.9  
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    25   7.8  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 31.9 bits (69), Expect = 0.090
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 650 HYLK*HQVWDHQFLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 513
           HYL  +   +  F H+  L ++ F +P +L+ + ++  H +P P L
Sbjct: 604 HYLVQNVHLNKDFRHSFLLTYKTFTTPQELFTLLVILFHELPPPGL 649


>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 614 FLHAIFLHHQVFLSPSKLYVIKLVYLHYIPLPFL 513
           F++   L+HQ+ LS S  ++  L+  H++   FL
Sbjct: 154 FINFFLLYHQIILSHSLFHISHLISFHFLFFSFL 187


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 213 FFLIHIGGEYL*CKHNFKIILSIFVSKFII-CFNSKQIF 100
           FF +H    YL  K+ F+ +  I + KF   CFNSKQ F
Sbjct: 324 FFWLH---SYLMKKYPFRRVPLIPLKKFHSKCFNSKQFF 359


>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 575 SPSKLYVIKLVYLHYIPLPFLYRLRTYNEFF*LFL 471
           SPS   + K+V+L  + L F+     Y+ F  +FL
Sbjct: 135 SPSSFLLGKIVFLILVDLNFIISQSCYDSFLPIFL 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,583,242
Number of Sequences: 5004
Number of extensions: 50275
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)